PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g070220.1
Common NameMTR_7g070220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 507aa    MW: 56511.7 Da    PI: 7.0829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g070220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-1677133255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta +Aa a+++a+k+++g
  Medtr7g070220.1  77 NFRGVRQRI-WGKWVAEIREPIN-GkhvgeKANRLWLGTFTTAHDAALAYDKAAKAMYG 133
                      69****998.**********855.44876666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-2976140No hitNo description
PfamPF008471.5E-1176133IPR001471AP2/ERF domain
SMARTSM003805.8E-3577147IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1877142IPR016177DNA-binding domain
PROSITE profilePS5103221.61477141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2877142IPR001471AP2/ERF domain
PRINTSPR003672.4E-87889IPR001471AP2/ERF domain
PRINTSPR003672.4E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MKIDTVSGQR KSRKRRSGGR TDSVEDTLEK WKNYNRQQQQ KLGCRGNGAD KIHKVPAKGS  60
RKGCMRGKGG PQNSDCNFRG VRQRIWGKWV AEIREPINGK HVGEKANRLW LGTFTTAHDA  120
ALAYDKAAKA MYGPSARLNF PDGSPSSSSG GSADSMNGEE DLGKAEELEG NLHQFEEENK  180
ILSKDFVSDD DSVEESKEVM IDGTVQCPTN KKCKKMVHQR SYKNVKSETH GENKRLEREL  240
GKVLENSSLD GEFNHVQKEP MDAGMNSGAD RRSSDIADLV QSEETIRGSP EDLKSFELSC  300
SNHFFGNQHN MLPDSNPRSS SEHCNIKTEA SLAKKHKKEE NGHFLSHARS QNEQNKNGYF  360
DEMESELKGL EYKLGGQSID CKNDEAQIVV PYMQGIHLFG GDSVGPIERM SQVEALNNNT  420
NKNTKLKEKG SNGNAFHGLS SGQSRKLSDL SQQLQKLGGY LPENWNNMQF ADLEVGYDYS  480
FLKPDYDFGL LEEKKLLDIC FSHIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1777141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g070220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1518750.0CU151875.4 M.truncatula DNA sequence from clone MTH2-49J7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623385.20.0uncharacterized protein LOC11408065
TrEMBLG7KTA20.0G7KTA2_MEDTR; DRE transcription factor
STRINGAES796030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.13e-32ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]