PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g067080.1
Common NameMTR_7g067080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 314aa    MW: 35684.8 Da    PI: 8.0894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g067080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-073479346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
  Medtr7g067080.1 34 KWTSEENKLFENALAYYDKDtpdRWIRVAEMIP-GKTVGDVIKQYRE 79
                     8********************************.******9999986 PP
2Myb_DNA-binding46.11.2e-14141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Medtr7g067080.1 141 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 185
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.43084IPR017884SANT domain
SMARTSM007176.6E-73183IPR001005SANT/Myb domain
SuperFamilySSF466896.03E-123388IPR009057Homeodomain-like
PfamPF002493.5E-63479IPR001005SANT/Myb domain
CDDcd001671.51E-53480No hitNo description
PROSITE profilePS5129420.244134190IPR017930Myb domain
SuperFamilySSF466891.86E-17135189IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-18137189IPR006447Myb domain, plants
SMARTSM007173.5E-13138188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12138185IPR009057Homeodomain-like
PfamPF002494.2E-12141185IPR001005SANT/Myb domain
CDDcd001679.86E-11141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MILSRTMNRG VEVLSPASYI QNSNWLFQEN NGSKWTSEEN KLFENALAYY DKDTPDRWIR  60
VAEMIPGKTV GDVIKQYREL EEDVCVIEAG LIPVPGYTTS SFTLDWDNSE GYDEFKQFCS  120
VGGKRNGSTR PSEQERKKGV PWTEEEHRQF LLGLKKYGKG DWRNISRNFV TTRTPTQVAS  180
HAQKYFIRQL SGGKDKRRSS IHDITVVNLQ ETKSPSSESN NLSSPDHLVK VPNQPQNNNL  240
SGMVKQEFDW KLPDEGMSFV FNSTKGNMFV APSCGISSHE SKSPGRNVLR STHHGYQFSP  300
FDTILQMQSM QHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1631107783RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.11410.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g067080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684780.0EF468478.1 Medicago truncatula MYB transcription factor MYB33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449121.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A072U1U50.0A0A072U1U5_MEDTR; MYB transcription factor MYB51
STRINGXP_004492415.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]