PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g065050.1
Common NameMTR_7g065050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 517aa    MW: 57900.7 Da    PI: 7.5868
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g065050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093253621954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LAk++gL+ +qV++WF N R +
  Medtr7g065050.1 325 FEHflHPYPSDTDKLMLAKQTGLSRNQVSNWFINARVR 362
                      554458******************************88 PP
2BELL91.67.5e-30197263672
             BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +k k++Ll++l+eV++rY+qy++q+++vi sFe vaglg+a+pY+slA +a+S+hFr Lk+ i++q+
  Medtr7g065050.1 197 RKNKSRLLTVLDEVCRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMSKHFRFLKNVITDQL 263
                      5789************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-43132261IPR006563POX domain
PfamPF075262.8E-34137260IPR006563POX domain
PROSITE profilePS5007111.936303366IPR001356Homeobox domain
SMARTSM003892.5E-9306370IPR001356Homeobox domain
CDDcd000864.84E-12306367No hitNo description
SuperFamilySSF466895.99E-17308374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-27309370IPR009057Homeodomain-like
PfamPF059201.0E-18323362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAEEGFENYY HIPQQSRREK LRYLSQNQTS FIESSPTLNP SFSPLPSLYD PSLISPLDAI  60
NSNPFLYQMN HVYNHGGSNS NNNEVMLLKS EPLSLSLSSN KNNQNQMSAA NFQRYGSVVD  120
VSRNTVPLGP FTGYASVLKG SRFLKPAQQL LDEICDVGVR AEKIIADADA SLMETNHVIG  180
GMINGVDDED TLGGDGRKNK SRLLTVLDEV CRRYRQYYQQ IHAVITSFEY VAGLGNAAPY  240
ASLAINAMSK HFRFLKNVIT DQLQFIGKSN YHISNRKDES PRFHNGDGAP YSQSPGFMEH  300
VQQPVWRPQR GLPERAVSVL RGWLFEHFLH PYPSDTDKLM LAKQTGLSRN QVSNWFINAR  360
VRLWKPMVEE IHMLESQQSP KESQRDEHSR NNLSENNIAE NPSTSTDKFI DVAYKRTRNE  420
LHNMSVPNHS IASNQQVGNV GVSMMNNGAT SNGVSLTLGL HQNHGIGLSE PFNMSAAQRF  480
GLAHQPDSYA ASGFQLQNRQ FGRDFIGGQL LRDYVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15312370563Homeobox protein Meis2
3k2a_B1e-15312370563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g065050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1422240.0AC142224.5 Medicago truncatula clone mth2-20k24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623151.10.0BEL1-like homeodomain protein 9
TrEMBLG7L5K20.0G7L5K2_MEDTR; BEL1-like homeodomain protein
STRINGAES793690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-111TALE family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]