PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g062120.1
Common NameMTR_7g062120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 743aa    MW: 84092.2 Da    PI: 6.5757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g062120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3696.5e-1133697401374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+av+++d++ a++lL++++++++p gd +qRla+ f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  ++P+ k++
  Medtr7g062120.1 369 LRTLLVLCAQAVAADDHKSAHELLKQIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTS---AADFLKAYHLYLAACPFRKMT 459
                      5789************************************************************999998...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       ++ N +I+++v+++ rvH+iDf+i +G+QWp+++q +a Rp+gpp+lRiTg++ p+sg   +e++ etg+rLa +Ae+++vpfe+n+ +ak++
  Medtr7g062120.1 460 SFVSNVTIMKSVASSMRVHVIDFGILYGFQWPTFIQRIALRPGGPPKLRITGIDFPQSGfrPAERIIETGKRLAAYAESFNVPFEYNA-IAKKW 552
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++l+eL+++++E l+V + ++  +lldesv ++s+r+++L+l+++++P+++++   +   n++ F++rf eal ++s+lfd+le+ +pre+ 
  Medtr7g062120.1 553 DTIQLDELKIEKDEFLVVTCFYRGRNLLDESVVVDSPRNKILNLIRRIKPNIFIHGIVNGAFNAPFFVTRFREALFHFSSLFDMLESIVPREDW 646
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      er+ +E+e++g+e+ nv+aceg er+er et+++W+ r+ +aGF++ ++ +++++ a   +r  + + + ++e+s++l++gWk+r ++++S+W+
  Medtr7g062120.1 647 ERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQIRILRAGFSQQAFAKSTVERAVEKVRSSYHKDFVIDEDSKWLLQGWKGRIIYALSCWK 740
                      ****************************************************************9888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.734343720IPR005202Transcription factor GRAS
PfamPF035142.2E-110369740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MMDNLKGFFG STNEIQLRNQ SLPVLQNQRF ENGFFDQSIE FGSNMIPAEY TPSSTTTSIS  60
THEEPSPEEC EFSDAVLSYI NNILMEEDME DKTCMLQDSL DLQIAEKSFY EVIGEKYPVS  120
PLEKPQSLSS ETDGVGDNYF FDNYGTCVDD GDLSSIFTNN SLRGNLREAQ FPHNGFQGNS  180
IAQSSYSSTN SVKSTVEGTL DSPDSILQVS DQNSESQPIL QFQKGVEEAS KFLPNGNGLF  240
QNFDVDKYSM REPRVMKDEL SVKVEKDERD SFLFGSKGRK HPHGGEVDIE ENRSSKQAAI  300
YSEPLLRSTM MDTFLLHSLG DAKTHFTARR EALQVKTKMM TLPSNTSKAS TSRKGRSKKQ  360
NGKKEVIDLR TLLVLCAQAV AADDHKSAHE LLKQIRQHSN PFGDGNQRLA HIFADGLEAR  420
LAGTGSQIYK GLISKRTSAA DFLKAYHLYL AACPFRKMTS FVSNVTIMKS VASSMRVHVI  480
DFGILYGFQW PTFIQRIALR PGGPPKLRIT GIDFPQSGFR PAERIIETGK RLAAYAESFN  540
VPFEYNAIAK KWDTIQLDEL KIEKDEFLVV TCFYRGRNLL DESVVVDSPR NKILNLIRRI  600
KPNIFIHGIV NGAFNAPFFV TRFREALFHF SSLFDMLESI VPREDWERML IEKEIFGKEA  660
LNVIACEGCE RVERPETYRQ WQIRILRAGF SQQAFAKSTV ERAVEKVRSS YHKDFVIDED  720
SKWLLQGWKG RIIYALSCWK PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-483537413380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g062120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448874.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A072U0I20.0A0A072U0I2_MEDTR; GRAS family transcription factor
STRINGXP_004492362.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]