PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g059400.1
Common NameMTR_7g059400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 349aa    MW: 37305.1 Da    PI: 9.5349
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g059400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.52.9e-3874132462
           zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        +kcprCdstntkfCy+nnyslsqPr+fCkaCrryWtkGGalr vPvGgg+r+nk+s+
  Medtr7g059400.1  74 PLQKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTKGGALRSVPVGGGCRRNKRSK 132
                      5689****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3156125IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.15276130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVYTSLPPYM DPANWHQQQP NHQVANTSVN TPLLIPPPQP PPSNLTPSQP HGGSIRPGSM  60
ADRARMANIP MQEPLQKCPR CDSTNTKFCY FNNYSLSQPR HFCKACRRYW TKGGALRSVP  120
VGGGCRRNKR SKSSSNNTSK SPASSDRQTS STNNSPAVLS SPTPPPMRFM APLHHLGDHL  180
SEIGLNYGFS GPMGGVGDLN FHIGSSLGGG VGNGGGSASI LPVSNFEQWR MPQTHQFPFL  240
STLEASSSHG LLYPFEGGGN GGGANDQGHA YGGVSKVLSN NSSVKMEENQ SRQFLGMINN  300
NNNNNNNNPN SEQFWSSSAG GGANNSPWTD LSTAYNSSSA TTNSNYRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g059400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448812.10.0dof zinc finger protein DOF5.1
TrEMBLA0A072TZB10.0A0A072TZB1_MEDTR; Dof domain zinc finger protein
STRINGXP_004515618.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-40Dof family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]