PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g055857.1
Common NameMTR_7g055857
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 225aa    MW: 25438.8 Da    PI: 9.4288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g055857.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.8e-11108149351
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Medtr7g055857.1 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149
                      59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-4107164IPR001471AP2/ERF domain
PfamPF008472.6E-5108150IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-7108152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-6109160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGSSSFV NPLPLYCENL TGSENLSWHA KPKSEQPMLS DDASIPDSNT  60
VVQEEPGSSN ISGSSSSKEL LIQSTVGPAV KRRKRHRRKN LHSQEVSMRG VYFKNMKWQA  120
AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFDLP EEEKQELRKF KWDDFLAMTR  180
QAITRKKLKR MISPELPNSF DWESKQGVSG FSPYEDADQE TSMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g055857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448558.11e-168ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A072U9S61e-166A0A072U9S6_MEDTR; Ethylene response factor
STRINGXP_004515031.11e-108(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-40ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]