PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g055790.1
Common NameMTR_7g055790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17676.1 Da    PI: 10.9516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g055790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.83.2e-0971101535
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
           SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaev 35 
                      n+  r+ t+ k ++g+l K eELS+LC +ev
  Medtr7g055790.1  71 NDAARKETYKKTKKGLLNKVEELSILCRIEV 101
                      7888999***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.54559101IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-459114IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.67E-1160134IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-56181IPR002100Transcription factor, MADS-box
PfamPF003199.4E-871101IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-58196IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MTQISLIIIE FGERGTVINQ KSEVKEILKG PYVEGVSVLK VTTINFVFKF FSFVLVKTIT  60
RKKVKLEFNV NDAARKETYK KTKKGLLNKV EELSILCRIE VRGESGVLSK FRTMTKLEKK  120
KKMMNQETFK KQRVLKIKEQ TKKLRKDNRD K*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g055790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482271e-102AC148227.14 Medicago truncatula clone mth2-8f11, complete sequence.
GenBankAC1742961e-102AC174296.26 Medicago truncatula clone mth2-72l21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135760.11e-24PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-13AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLG7L0663e-99G7L066_MEDTR; SRF-type transcription factor (DNA-binding and dimerization domain) protein
STRINGAES790954e-91(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-09M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]