PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050710.1
Common NameMTR_7g050710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 325aa    MW: 37062.7 Da    PI: 10.5874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-1813104199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ +  + l+ + l++p+kf+e++g  k  +k + l++++g +W+++l   k++g+++++kGWk+F++ + +  g  ++F+++++s+f   v
  Medtr7g050710.1  13 FFKIILAQNLLQGN-LRMPRKFVEKYG--KGLPKAICLKTPNGAKWRLNL--VKSDGKIWFEKGWKQFAEHHSIGHGHLLLFRYEKTSKF--EV 99 
                      66777666666555.***********8..458899***************..********************************998999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f k
  Medtr7g050710.1 100 QIFGK 104
                      99876 PP
2B366.63.5e-21206308199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+ v+  s+v ++ +l +p  f ++h +++k++  +++l+ ++gr+W+ +++ r++ +     + lt+GW+eF+k+n+Lk+gD++ F+l++++ 
  Medtr7g050710.1 206 FVVVMGASYVERRFLLNIPCLFGKTHfDLNKKR-EDIQLQALNGRVWSARYSTRNRTSDngirFELTSGWEEFAKDNNLKVGDVCKFELISSTI 298
                      6778889*******************9777655.59***************884444334788***************************9999 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                       ++ v+vfr+
  Medtr7g050710.1 299 LTFIVHVFRE 308
                      999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-239105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2410105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.67612105IPR003340B3 DNA binding domain
PfamPF023626.2E-1613104IPR003340B3 DNA binding domain
SMARTSM010191.8E-1813105IPR003340B3 DNA binding domain
CDDcd100172.47E-1713102No hitNo description
Gene3DG3DSA:2.40.330.109.8E-24197308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-23203310IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-24204307No hitNo description
PROSITE profilePS5086314.283206309IPR003340B3 DNA binding domain
PfamPF023627.9E-20206308IPR003340B3 DNA binding domain
SMARTSM010195.5E-14206309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASEIAEVKP IQFFKIILAQ NLLQGNLRMP RKFVEKYGKG LPKAICLKTP NGAKWRLNLV  60
KSDGKIWFEK GWKQFAEHHS IGHGHLLLFR YEKTSKFEVQ IFGKSALEID YSFKRVESKK  120
FSNGQGNKPP NGENCRAAQK RKANSSSEFH RQCEIASSSC VKFGKSQKLA VQQVDRMSNG  180
KQVITTAKKV TTLERAQSFK ICNPSFVVVM GASYVERRFL LNIPCLFGKT HFDLNKKRED  240
IQLQALNGRV WSARYSTRNR TSDNGIRFEL TSGWEEFAKD NNLKVGDVCK FELISSTILT  300
FIVHVFRETD NDKKKCSTSQ SRMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515210.0AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence.
GenBankAC1691800.0AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634792.11e-143B3 domain-containing transcription factor VRN1
TrEMBLG7KVW60.0G7KVW6_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES788930.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-34B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]