PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050590.1
Common NameMTR_7g050590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 298aa    MW: 34412.6 Da    PI: 10.6674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-181771799
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     ++p+kf+e++g  +  sk + l++++g +W+++l   k++g+++++kGWkeF+k + L  g  ++Fk++++s f  +v++f+k
  Medtr7g050590.1  1 MMPRKFVEKYG--EGLSKAIYLKTPNGAKWKLNL--VKSDGKIWFEKGWKEFAKHHSLAHGHLLLFKYKRNSHF--LVHIFEK 77
                     57********8..45899****************..*********************************99999..****997 PP
2B360.23.5e-19180281199
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+ v+  s+v  + +l +p++f ++h +++k+++ ++ ++ ++  +W  k++++k++++    ++t+GWk F+k+n+Lk+ D++ F+l++ +  
  Medtr7g050590.1 180 FVVVMRASYVKHHFLLNIPRSFGNRHfDLDKKRG-DIYFQVLNKGVWPAKYSIKKTRNGlhfELMTTGWKAFAKDNKLKVDDVCKFELISCTIL 272
                      788999********************97777666.9***************999999998777899**********************977888 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      ++ v++fr+
  Medtr7g050590.1 273 TFIVHIFRE 281
                      899999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-21185IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.003178IPR003340B3 DNA binding domain
CDDcd100173.92E-15175No hitNo description
PfamPF023621.1E-15277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-21278IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-8378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22171281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23175283IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-20178280No hitNo description
PROSITE profilePS5086311.476180282IPR003340B3 DNA binding domain
PfamPF023624.0E-18180281IPR003340B3 DNA binding domain
SMARTSM010192.0E-16180282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMPRKFVEKY GEGLSKAIYL KTPNGAKWKL NLVKSDGKIW FEKGWKEFAK HHSLAHGHLL  60
LFKYKRNSHF LVHIFEKSAF EINYPFQRVA AKTNRVSNGQ GNKPPNGESR RASQKRKDNS  120
FELHQPCDIG SSSCFRVEKL QKVASLHHTD RESKGKEVIT GKRVTALERA QSFKTSNPSF  180
VVVMRASYVK HHFLLNIPRS FGNRHFDLDK KRGDIYFQVL NKGVWPAKYS IKKTRNGLHF  240
ELMTTGWKAF AKDNKLKVDD VCKFELISCT ILTFIVHIFR ETDNDNTNCS TFQSRIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691800.0AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622666.30.0B3 domain-containing transcription factor VRN1
TrEMBLG7KVV70.0G7KVV7_MEDTR; Putative transcription factor B3-Domain family
STRINGAES788840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-28B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]