PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g046260.1 | ||||||||
Common Name | MTR_7g046260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26195.5 Da PI: 4.9762 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 60 | 110 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Medtr7g046260.1 60 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 110 69****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-13 | 60 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 60 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-37 | 60 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 60 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-32 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 2.4E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MENDANENFF STSSSSTPTS SNSNSNSNSS TNLETKNNPQ NGNKKSKKRE RNENDTKHPT 60 YRGVRMRAWG KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAYLNFPNLA 120 QNLPRPSTTS PKDIQVAAAK AAAIVFEEIK EDQDQDQDQV SFSTLSSIDN VQESNSSSPS 180 TTATTNDDID DTLFDLPDLF PDGKNGILSY YSSWHLCAVD SGLRLEEQLS SWEYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 56 | 118 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g046260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144591 | 0.0 | AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622605.1 | 1e-175 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 5e-64 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | G7KUW7 | 1e-173 | G7KUW7_MEDTR; AP2/ERF domain transcription factor | ||||
STRING | AES78823 | 1e-174 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g046260.1 |
Entrez Gene | 11436276 |
Publications ? help Back to Top | |||
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