PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g037260.1
Common NameMtrDRAFT_AC157506g17v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 359aa    MW: 41173.6 Da    PI: 9.3714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g037260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-19145191148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTt+Ed +l+++v ++G + W++Ia++m+ gR +kqc++rw+++l
  Medtr7g037260.1 145 KGQWTTDEDRILIQLVDRFGLRKWSKIAKYMN-GRIGKQCRERWNNHL 191
                      799*****************************.*************97 PP
2Myb_DNA-binding61.41.9e-19197241147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +WT+eEd++l++a+k  G++ W+ Iar+++ gRt++++k++w++ 
  Medtr7g037260.1 197 KESWTEEEDKILIEAHKIVGNK-WAEIARRLP-GRTENSVKNHWNTT 241
                      578*******************.*********.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.625140191IPR017930Myb domain
SuperFamilySSF466894.4E-31142238IPR009057Homeodomain-like
SMARTSM007171.4E-14144193IPR001005SANT/Myb domain
PfamPF002496.1E-18145191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-27146199IPR009057Homeodomain-like
CDDcd001674.00E-15148191No hitNo description
PROSITE profilePS5129427.393192246IPR017930Myb domain
SMARTSM007171.1E-18196244IPR001005SANT/Myb domain
PfamPF002493.1E-17197241IPR001005SANT/Myb domain
CDDcd001671.09E-14199242No hitNo description
Gene3DG3DSA:1.10.10.609.4E-22200244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIPSFRDPIS MIPMPSYNDA HNNGSQREFL SARNPMIFTS NNNKIEAMHG CLHTGEGIWD  60
LSKKNIFRYG ETSQSMVSPD LSPSLVYDAH RSVSIKPKLQ GDTFFYGGLR NEPQENDGPV  120
LTGQRRQKRI QNNSEIQHKD LNIIKGQWTT DEDRILIQLV DRFGLRKWSK IAKYMNGRIG  180
KQCRERWNNH LCPDIKKESW TEEEDKILIE AHKIVGNKWA EIARRLPGRT ENSVKNHWNT  240
TKRRQKAKKK NRGNSSKGTL LLKYIMEVTS AKKVEKEMMN NSPSMMNIGN QPNYESSESD  300
FFSEGLTTPE DGIGGYVPMM FNDDDGMASG FRSNGMEFFP EIPIKQEIDL MEKIYSNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-441422454107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g037260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575060.0AC157506.3 Medicago truncatula chromosome 7 clone mth2-50e7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.11e-147transcription factor MYB98
TrEMBLA2Q4M10.0A2Q4M1_MEDTR; Homeodomain-related
TrEMBLG7KR960.0G7KR96_MEDTR; SWI3, ADA2, N-CoR and tfiiib DNA-binding domain protein
STRINGAES786300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-59myb domain protein 98