PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g037130.1
Common NameMTR_7g037130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 359aa    MW: 41004.5 Da    PI: 8.6669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g037130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.48.8e-20145191148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTt+Ed +l+++v ++G ++W++Ia++m+ gR +kqc++rw+++l
  Medtr7g037130.1 145 KGQWTTDEDRILIQLVDRFGLRNWSKIAKYMN-GRIGKQCRERWNNHL 191
                      799*****************************.*************97 PP
2Myb_DNA-binding56.37.3e-18197239145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eEd++lv+a+k  G++ W+ I+r++  gRt++++k++w+
  Medtr7g037130.1 197 KEAWTEEEDKILVEAHKIVGNK-WAEISRRLS-GRTENSVKNHWN 239
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.491140195IPR017930Myb domain
SuperFamilySSF466891.11E-29142238IPR009057Homeodomain-like
SMARTSM007173.3E-14144193IPR001005SANT/Myb domain
PfamPF002491.1E-18145191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-23146198IPR009057Homeodomain-like
CDDcd001671.24E-15148191No hitNo description
PROSITE profilePS5129419.812196246IPR017930Myb domain
SMARTSM007179.3E-16196244IPR001005SANT/Myb domain
PfamPF002494.3E-15197239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-17199241IPR009057Homeodomain-like
CDDcd001672.41E-12199242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIPSSRHPIS GISMASYNDA HNNGSQREFL STQNPMIFTP NNNKIEAMHG CLNTREGIWD  60
LSKKNIFRYG ETSQPRVSPD LSPSLVYDAH PSVSIKPKLQ GDIFFYGGFG NEPQENNGPV  120
LTSQRLQKRI QNNIEIQHKD LNIIKGQWTT DEDRILIQLV DRFGLRNWSK IAKYMNGRIG  180
KQCRERWNNH LCLDIKKEAW TEEEDKILVE AHKIVGNKWA EISRRLSGRT ENSVKNHWNA  240
TKRCLKAKKK NRGNSSKGTL LLKYIMEVTC AKKVEKEMMT NSLSMMNIGN QPNYESSESD  300
FFSEGLTTPE DEIGGYVPMM FNDDDGMASG FGSNGMEFFP EIPKKQEIDL MEKIYRNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-401422414103B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g037130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575060.0AC157506.3 Medicago truncatula chromosome 7 clone mth2-50e7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.11e-148transcription factor MYB98
TrEMBLG7KR910.0G7KR91_MEDTR; SWI3, ADA2, N-CoR and tfiiib DNA-binding domain protein
STRINGAES786250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-53myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]