PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g035300.1 | ||||||||
Common Name | MTR_7g035300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 27833.1 Da PI: 5.3582 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 120 | 158 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++eE+ +l +a++ +G + W+ I+r+++ gR + +k++++ Medtr7g035300.1 120 SEEEQNILDQAHNIFGDN-WTEISRRLP-GRNDSYVKNHLN 158 89**************77.*********.**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.903 | 71 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 27 | 75 | 113 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.98E-14 | 94 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 94 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.706 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-6 | 115 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 120 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-5 | 120 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MFPMSQNDCS KYREYHMDEV NHHSSFATSY YKTADTNEIG HKYQDHDQEP VLIYHNQQKT 60 IQENNEIHHK YSNINAERWT TKENSIFVES VDLFLNRWTL KQCMERWYHL KPDIKNEPLS 120 EEEQNILDQA HNIFGDNWTE ISRRLPGRND SYVKNHLNAI KQVEDAKKKS MKMVKIENQP 180 NYIFEGLTTL EDELGGYVPM TFNDDYELYG LEFYPEAPMK KEINFMKMLC GNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-16 | 79 | 159 | 10 | 102 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g035300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626606.1 | 1e-82 | transcription factor MYB118 | ||||
TrEMBL | A0A072TYJ9 | 1e-175 | A0A072TYJ9_MEDTR; Myb-like DNA-binding domain protein | ||||
STRING | AES78630 | 3e-45 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-20 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g035300.1 |
Entrez Gene | 25498043 |
Publications ? help Back to Top | |||
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