PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g033320.1
Common NameMTR_7g033320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 502aa    MW: 56139.7 Da    PI: 4.6038
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g033320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.5e-29561962128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tk 79 
                      p G++F+P+d e++ e+L++k+ + +      +  ee+i++++    i++++P++Lp  +k++ ++++fF+++ ++y++g+rk+r+      t+
  Medtr7g033320.1  56 PLGIKFDPSDVEIL-EHLAAKCGAGNikphmfI--EEFIPTLEgeqgICYTHPENLP-GAKKDGSSVHFFHRTMNAYSSGQRKRRKihhrgsTE 145
                      89***********9.99*****99995655322..333443323334**********.55677899*******************756666532 PP

              NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+k++++ +ge++g kk++v+y  +++++k+ k+dW mh+y+l
  Medtr7g033320.1 146 dHVRWHKTGKTKAIIE-HGEHKGFKKIMVLYirSEKESKSYKSDWKMHQYHL 196
                      4788************.9999**********7656788888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3341215IPR003441NAC domain
PROSITE profilePS5100529.03155215IPR003441NAC domain
PfamPF023654.0E-1156196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAREWLINIR GFAKKLRSTS LSSADQIKDC GACRECPNCH SRIDNSDVSS EWPGFPLGIK  60
FDPSDVEILE HLAAKCGAGN IKPHMFIEEF IPTLEGEQGI CYTHPENLPG AKKDGSSVHF  120
FHRTMNAYSS GQRKRRKIHH RGSTEDHVRW HKTGKTKAII EHGEHKGFKK IMVLYIRSEK  180
ESKSYKSDWK MHQYHLGTDE DEKNGEYVVS KIFYKQNEKN EEKPMAEEPD SITSRTSPRT  240
PKPNPPNPPR TGKCVDNGNI DETSLMPFAE DAKFIPVESN AMQSDIQDQE NTYNFPWLAG  300
ESQAALQFDI QDHDNFAWLA GESQAALQSD IQDHDNSAWL AGESQAALQS DIQNHDNSVW  360
LAGESQAVLQ SDIQNHDNSA WLAGESQAAL QTDIQNRDNT NNSAWLAGES QAMENSEYAG  420
LDDLLLCDEI FDSSTLFTDS QLDSINDLTH YENRMTGNYN VSSETSTAVL DTLELDTPPD  480
FDLSNLTFGS QESILGMTGL L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.189500.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g033320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448091.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A072TZ220.0A0A072TZ22_MEDTR; NAC transcription factor-like protein
STRINGXP_004499395.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-85NAC domain containing protein 44
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]