PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g028925.1
Common NameMTR_7g028925
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 95aa    MW: 10591.9 Da    PI: 10.2431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g028925.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-142975356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr      +Wv+eIr p++   r r++lg+++t e+Aa+a +aa  +l+g+
  Medtr7g028925.1 29 YRGVRK----RKWVSEIRLPNS---RERIWLGSHDTQEKAARAFDAALYCLRGP 75
                     99**74....46*******933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.93E-252784No hitNo description
SMARTSM003804.7E-232888IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-162883IPR016177DNA-binding domain
PfamPF008471.5E-72874IPR001471AP2/ERF domain
PROSITE profilePS5103216.5812882IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-242883IPR001471AP2/ERF domain
PRINTSPR003672.3E-62940IPR001471AP2/ERF domain
PRINTSPR003672.3E-64864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MTCCSNPTSS IINVTTTDQN PNSSNNKIYR GVRKRKWVSE IRLPNSRERI WLGSHDTQEK  60
AARAFDAALY CLRGPHASFN FPNTPLTINV AFHG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g028925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465861.22e-52ethylene-responsive transcription factor ERF018
SwissprotQ84QC21e-29ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A072TYS12e-64A0A072TYS1_MEDTR; Ethylene response factor
STRINGXP_004498968.11e-36(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]