PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g028905.1 | ||||||||
Common Name | MTR_7g028905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 118aa MW: 13461.4 Da PI: 9.0302 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.5e-39 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk +rr+C++dC+++pyfp ++p++f vh+++G snv k+l++lp+ r++a++s++ eA++r++dPvyG+vg+i+kl+qq++ +++el Medtr7g028905.1 5 RCAACKSQRRRCPPDCIFSPYFPPNDPQRFSSVHRIYGGSNVGKMLQQLPHYVRHQAANSMYLEAQCRVQDPVYGCVGIISKLSQQIQDTEVEL 98 6********************************************************************************************* PP DUF260 95 allkeel 101 a++k+++ Medtr7g028905.1 99 AKIKTQI 105 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.603 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-39 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MIYSRCAACK SQRRRCPPDC IFSPYFPPND PQRFSSVHRI YGGSNVGKML QQLPHYVRHQ 60 AANSMYLEAQ CRVQDPVYGC VGIISKLSQQ IQDTEVELAK IKTQIAYHKL HNQQFDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-35 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-35 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g028905.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU179894 | 3e-53 | CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447968.1 | 1e-83 | LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 5e-47 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A072U820 | 3e-82 | A0A072U820_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AET00525 | 2e-68 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-49 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g028905.1 |
Entrez Gene | 25497793 |
Publications ? help Back to Top | |||
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