PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g025010.1 | ||||||||
Common Name | MTR_7g025010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WOX | ||||||||
Protein Properties | Length: 591aa MW: 65674.3 Da PI: 6.2328 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.5e-18 | 45 | 105 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R++++++q+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ Medtr7g025010.1 45 KPRWNPKPQQIRILEAIFNSgMVNPPREEITKIREQLqefgQVGDANVFYWFQNRKSRSKQ 105 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 108.4 | 4.3e-35 | 44 | 107 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+p+Qi+iLe++++sG+++P++eei++i+++L+e+G+++d+NVfyWFQNrk+R++qk+ Medtr7g025010.1 44 PKPRWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQKK 107 689***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-12 | 41 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.819 | 41 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-7 | 43 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.15E-8 | 44 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 45 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-15 | 45 | 105 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.20.1130.10 | 3.0E-33 | 414 | 551 | IPR001280 | Photosystem I PsaA/PsaB |
Pfam | PF00223 | 1.2E-23 | 415 | 495 | IPR001280 | Photosystem I PsaA/PsaB |
SuperFamily | SSF81558 | 3.4E-33 | 417 | 554 | IPR001280 | Photosystem I PsaA/PsaB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009522 | Cellular Component | photosystem I | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MTSSNKHWPS MFKKSTNASN QRNSQGLNSS LLTGGDGEER TPEPKPRWNP KPQQIRILEA 60 IFNSGMVNPP REEITKIREQ LQEFGQVGDA NVFYWFQNRK SRSKQKKRFI HNKKRETQQN 120 SGHQTLTSPP NSSSSSSSGH QKASPDEIVI SNNIGFSNAN DGMVVFSNSP AVSVNQNQVD 180 AYFQTPTGTD LQLPTPPFFS FPVQNHINEV VPNAMTPPHR FNHLSGFMNY GSENGNSSMV 240 QPLPQQNVDV PLVNHEITMN YGSKSGIASM NHRYDQEKIQ EEAMNMIHMY QQDPQLNFGV 300 ATTSSNDDES VDLAPLPPTT IGAPDAVPFP IIDHRHQGFG VEDEAEKCMV ITKDAAFKVD 360 AGPFNVRASF GDRAVLFDSS GTPVLTDEWG VTLDSLHHGA EYYLREKLKQ DVQTRLGSLT 420 IIVCSSSYMY DMPPYTYLAA DYGTYLSLFT NNMRIGGFLI VGVDAYAAIF MVRGYDSTTQ 480 YNDLLDRVLR HHDVINIWLP RDMFSDNVVQ LQFVFVQWIQ NNYALAPGTT APGATTSTSL 540 TWGGDFVAVG YQPTLNTEMA SIRFDRSSPT TTFAHLDATA ILSRGLASKH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5l8r_A | 2e-48 | 416 | 555 | 365 | 529 | Photosystem I P700 chlorophyll a apoprotein A1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7742 | 1e-41 | flower| glandular trichome| leaf| seed | ||||
Mtr.7950 | 1e-41 | leaf| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g025010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF512496 | 0.0 | KF512496.1 Medicago truncatula Wuschel-like homeodomain-containing protein (Wox9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626123.1 | 0.0 | WUSCHEL-related homeobox 9 | ||||
TrEMBL | G7KXX1 | 0.0 | G7KXX1_MEDTR; Wuschel-related homeobox protein, putative | ||||
STRING | AES78136 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-40 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g025010.1 |
Entrez Gene | 11439786 |
Publications ? help Back to Top | |||
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