PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g021010.1 | ||||||||
Common Name | MTR_7g021010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15612.4 Da PI: 8.9588 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.9 | 1.9e-21 | 10 | 60 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+ k++g Medtr7g021010.1 10 PHYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDKAAFKFKG 60 68********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-15 | 10 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.09E-35 | 10 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-34 | 11 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.816 | 11 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-23 | 11 | 69 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-39 | 11 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-12 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-12 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MLMKETKKKP HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FDTAEDAALA YDKAAFKFKG 60 TKAKLNFPER VVQCNSYSSS ANSAIQQSGS VSNSHDQQVF PNLFQYAQIL ESDAEFPYYA 120 SHLFNQQQEG DPHPPDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 8 | 71 | 2 | 66 | ATERF1 |
3gcc_A | 4e-30 | 8 | 71 | 2 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2833 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g021010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146333 | 0.0 | AC146333.35 Medicago truncatula clone mth2-8d3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621630.1 | 4e-91 | ethylene-responsive transcription factor ERF113 | ||||
Swissprot | Q9LYU3 | 1e-39 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | G7KSW6 | 1e-98 | G7KSW6_MEDTR; Ethylene response factor | ||||
STRING | AES77848 | 2e-90 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 2e-25 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g021010.1 |
Entrez Gene | 11438832 |