PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g020870.2 | ||||||||
Common Name | MTR_7g020870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 26785.9 Da PI: 5.8338 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.2 | 3.8e-27 | 40 | 131 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++++ e+r++ g+ + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + ++l+ Medtr7g020870.2 40 RWTRQEILVLIQGKSDAESRFKPGRngsgfgSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLR 131 8*********************986666777*********************************************9999999998888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.783 | 33 | 103 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.68E-15 | 39 | 110 | No hit | No description |
Pfam | PF13837 | 3.4E-13 | 40 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 40 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MALEQPNPNS DDGTVNGNGT PPSSAVNGGE DGKPTARLPR WTRQEILVLI QGKSDAESRF 60 KPGRNGSGFG SSEPKWALVS SYCKKHGVNR GPIQCRKRWS NLAGDYKKIK EWESQVRDET 120 ESFWLMRNDL RRERKLPGYF DKEVYEILDS PSMAVAAAAA VAASVVVPVN VSVSVSETVG 180 GDEEVHIYDS NRKVSGEDGL FSDFEKDEVL VANKDVHVPS PVPISEKQFL PLLRGCQGEG 240 NAPGK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11663 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g020870.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621623.1 | 0.0 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-66 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | G7KSV7 | 1e-180 | G7KSV7_MEDTR; Myb/SANT-like DNA-binding domain protein | ||||
STRING | AES77841 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-68 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g020870.2 |
Entrez Gene | 11445596 |
Publications ? help Back to Top | |||
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