PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g018170.1
Common NameMTR_7g018170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 397aa    MW: 43757.3 Da    PI: 4.901
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g018170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.1e-072464438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     r+C+++ + +   fC+ ++ +lC+ C   +H        H+
  Medtr7g018170.1 24 RTCDTCRSAPCAVFCRADSAYLCAACDARIHAAnrvasrHE 64
                     79*****************************5555666666 PP
2zf-B_box30.38.7e-1066111342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Medtr7g018170.1  66 VWVCEACERAPAAFLCKADAASLCSTCDADIHSAnplasrHQRVPI 111
                      689*****************************66999999*99997 PP
3CCT70.35e-24327370144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Medtr7g018170.1 327 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 370
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2392168IPR000315B-box-type zinc finger
SMARTSM003361.6E-92168IPR000315B-box-type zinc finger
CDDcd000211.63E-82468No hitNo description
PROSITE profilePS5011911.20664111IPR000315B-box-type zinc finger
PfamPF006431.1E-765111IPR000315B-box-type zinc finger
CDDcd000212.48E-867111No hitNo description
SMARTSM003362.3E-1069111IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648327369IPR010402CCT domain
PfamPF062037.8E-18327369IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLEQDFLTTT SATATVRSAG TWARTCDTCR SAPCAVFCRA DSAYLCAACD ARIHAANRVA  60
SRHERVWVCE ACERAPAAFL CKADAASLCS TCDADIHSAN PLASRHQRVP ILPISGYLYG  120
PPATLLGAED EGFVRGGCEV EEEEDEGVDH DMEDENEAAS WLLLNPLKNN NNNSNNNISN  180
DHNQVANNGY LFSGEVDEYL DLVDCNSCGG DENTFTTNNT HHHDEYSQQQ QQQDHYGVPQ  240
KSYVGDSVVP VQQQQVQNFQ LGLEFESSKA GFSYNGGSIS QSVSVSSMDV GVVPESTMTY  300
SRPPKGTIDL FSGPSIQMSS HFSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP  360
RIKGRFAKRT DVEAEVDQMF STSLITEVGY GIVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.134680.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g018170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8309210.0AY830921.1 Pisum sativum CONSTANS-LIKE a (COLa) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447714.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-128COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A072TWC70.0A0A072TWC7_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGXP_004491763.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.12e-53CONSTANS-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]