PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g017260.1
Common NameMTR_7g017260, MtrDRAFT_AC172742g10v1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 276aa    MW: 31780.2 Da    PI: 7.8161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g017260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172776148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+ +++++G g W++I+++ g  ++R++k+c++rw +yl
  Medtr7g017260.1 27 KGAWTYEEDNLLKAYINKYGEGKWHLIPQRAGsgLNRCRKSCRLRWINYL 76
                     79**********************************************97 PP
2Myb_DNA-binding47.44.3e-1582127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r++++++E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Medtr7g017260.1  82 RKSFSEDEVDMILRLHKLLGNR-WSLIAGRLP-GRTANSVKNYWNTHL 127
                      789*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7972280IPR017930Myb domain
SuperFamilySSF466896.79E-2924123IPR009057Homeodomain-like
SMARTSM007178.2E-152678IPR001005SANT/Myb domain
PfamPF002497.1E-162776IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-222883IPR009057Homeodomain-like
CDDcd001672.79E-102976No hitNo description
PROSITE profilePS5129418.38581131IPR017930Myb domain
SMARTSM007171.4E-1481129IPR001005SANT/Myb domain
PfamPF002495.6E-1482127IPR001005SANT/Myb domain
CDDcd001671.85E-1084127No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2384131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKLIKERVYE DIKGVGMDMD NTIGVKKGAW TYEEDNLLKA YINKYGEGKW HLIPQRAGSG  60
LNRCRKSCRL RWINYLKPNI NRKSFSEDEV DMILRLHKLL GNRWSLIAGR LPGRTANSVK  120
NYWNTHLLKK VVSKQEEEKE KPMETMKAHQ VIKPRPITFS TQSSWLNVKH NNFVTQPLLA  180
SNNDGCFPRD RDDKMTMVVP NQIGKDCASS SQPILGNVPI PCTMWSESLW NLGEQVDSEI  240
IGSSSSLQVE NYEEFSIVDD FWDFNICDYD SLWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24271317108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g017260.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1999990.0FJ199999.1 Medicago truncatula MYB transcription factor LAP3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621572.20.0transcription factor MYB75
SwissprotQ9FNV92e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA2Q6180.0A2Q618_MEDTR; Homeodomain-related
STRINGAES777900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-54myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]