PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g015010.1 | ||||||||
Common Name | MTR_7g015010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 352aa MW: 39686.7 Da PI: 8.968 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.7 | 1.3e-31 | 55 | 175 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak+ i++l+ + +++s++e ++++ + + Medtr7g015010.1 55 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQDIDQLPPLpnfspvgtnfnfGFPSSNELNNQQLFNFNR 148 689*************************************************************888877777777666665553333333333 PP TCP 84 nsssg...kaaksaakskksqksaasal 108 ++++ + ++++ + k+++k+ + l Medtr7g015010.1 149 -NNIHwegSTSSQNSTWKSNPKEVSREL 175 .333355422222223333333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-29 | 57 | 174 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.207 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MNKNSKEDFP LKQEVHQNSN DHEKEKANSP SSSSLASSQW PRLKDPRIVR VSRAFGGKDR 60 HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLNAAKQ DIDQLPPLPN 120 FSPVGTNFNF GFPSSNELNN QQLFNFNRNN IHWEGSTSSQ NSTWKSNPKE VSRELVNDKP 180 NYLMNSTQEE ENINKQGSNI EVPTATVFPN NNNMLQRPNH PSFLGLLNNM PLGTNYQWGG 240 TSNDAENSSQ LGNNGFITSL PPMLSLSTGN SSQMMLGTTQ SYFSSNVNAM EMDHHHQREI 300 HNHHYHQMLS SSNSSQNPMT NSLNNPSFSL AKFLQNSREN SSNKEQEFTT K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g015010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052494 | 0.0 | BT052494.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-J-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447599.1 | 0.0 | transcription factor TCP17 | ||||
TrEMBL | A0A072U750 | 0.0 | A0A072U750_MEDTR; Putative transcription factor TCP family | ||||
STRING | XP_004499467.1 | 1e-123 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-46 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g015010.1 |
Entrez Gene | 25497543 |
Publications ? help Back to Top | |||
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