PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g011820.1
Common NameMTR_7g011820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 522aa    MW: 57213.6 Da    PI: 7.4281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g011820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.5e-33228285260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkver+  d++++ei+Y+g+Hnhek
  Medtr7g011820.1 228 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHEK 285
                      8****************************************.***************85 PP
2WRKY107.28e-34409467159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Medtr7g011820.1 409 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 467
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-29224287IPR003657WRKY domain
SuperFamilySSF1182904.05E-26226286IPR003657WRKY domain
SMARTSM007745.8E-37227285IPR003657WRKY domain
PROSITE profilePS5081123.801228286IPR003657WRKY domain
PfamPF031061.4E-25228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-37394469IPR003657WRKY domain
SuperFamilySSF1182901.29E-29401469IPR003657WRKY domain
PROSITE profilePS5081139.192404469IPR003657WRKY domain
SMARTSM007749.6E-40409468IPR003657WRKY domain
PfamPF031061.8E-26410467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSTTTPSSAD TSPPPPRPTI TLPPRPSVEA FFTSNAVSPG PMTLVSSFFA TESATFSQLL  60
AGAMASPLAF SSSSSLAGEY SFGKEDDGGS LNGGFKQSRP MNLVIARSPV FTVPPGLSPS  120
GFLNSPGFFS PQSPFGMSHQ QALAQVTAQA VLAQSQNMHM QPEYQLVSYE APTERLAEQP  180
SYTRNEAPEQ QVTAPVSEPR NAQMETSEIT HSDKKYQPSS LPIDKPADDG YNWRKYGQKQ  240
VKGSEYPRSY YKCTHLNCPV KKKVERAPDG HITEIIYKGQ HNHEKPQPNR RVKENNSDLN  300
GNANVQPKSD SNSQGWFGNS NKISEIVPDS SPPEPESDLT SNQGAIRPRP GSSESEEVGN  360
AENKEEGVDC EPNPKRRSIE PAVPEVPPSQ KTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ  420
KVVKGNPHPR SYYKCTSAGC NVRKHVERAS TDPKAVITTY EGKHNHDVPA ARNSSHNTAS  480
SMPSKPQALV PEKHPLLKDM EFGNNDQRPV HLRLKEEQII V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40228470878Probable WRKY transcription factor 4
2lex_A2e-40228470878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.11430.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g011820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621317.20.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-146WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLG7L3450.0G7L345_MEDTR; Putative transcription factor WRKY family
STRINGAES775350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-125WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]