PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g011170.1
Common NameMTR_7g011170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 310aa    MW: 34859.8 Da    PI: 7.0494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g011170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  Medtr7g011170.1 14 KGPWTSEEDQKLLSYIEEHGHGSWRSLPTKAGLERCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.45e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ ++++++ lG++ W++Ia +++ +Rt++++k++w+++l
  Medtr7g011170.1  67 RGKFSVQEEQTIIQLHAFLGNR-WSSIATRLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.304961IPR017930Myb domain
SuperFamilySSF466891.91E-2911108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002498.8E-161461IPR001005SANT/Myb domain
CDDcd001671.21E-91661No hitNo description
PROSITE profilePS5129424.96362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2565116IPR009057Homeodomain-like
SMARTSM007177.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.2E-1567112IPR001005SANT/Myb domain
CDDcd001675.50E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTSE EDQKLLSYIE EHGHGSWRSL PTKAGLERCG KSCRLRWTNY  60
LRPDIKRGKF SVQEEQTIIQ LHAFLGNRWS SIATRLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKN ETLLPENHSK NVANLSHKAQ WESARLEAEA RLVRESKLRS QLQHQFGSNT  180
SVFPSQSSSS SSNQVLNIKE EGEKEWKGYE DSTHLLEFKD LMENSSMAFS STLQHEMTMI  240
NVAEEGFTNL LLDNSNSGDL SLSPESGGEC NTCDGSGSGG GSDFNEDNKN YWNNILNLVN  300
SSPSDSSMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g011170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400330.0AC140033.3 Medicago truncatula clone mth2-24f11, complete sequence.
GenBankAC1405440.0AC140544.22 Medicago truncatula clone mth2-17g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621270.10.0transcription factor MYB16
SwissprotQ9LXF11e-121MYB16_ARATH; Transcription factor MYB16
TrEMBLG7L2250.0G7L225_MEDTR; Myb transcription factor mixta-like protein
STRINGAES774880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-112myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]