PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g010950.1 | ||||||||
Common Name | MTR_7g010950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 487aa MW: 54412 Da PI: 6.5084 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6.3e-40 | 131 | 191 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Medtr7g010950.1 131 PDKIVPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 191 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-31 | 128 | 188 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-32 | 133 | 189 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.751 | 135 | 189 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 137 | 173 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MLETKDSAIK LFGKTIPILE VRVGDVVVES IDDDHHHFST NSSNESRNNK DEQDQEIEKN 60 TLGEKPSDEK NEDGIPIQST EEFTNPDAAS RTDEESITVS TERKAATLKT SKTEEEQDET 120 SNSQDKILKK PDKIVPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV 180 GAGRRKNKSS SSHYRQITVS EATLQNSRIH PSVKCNGTIL TFGSNSPVCE SMASVLKHAD 240 KTMQNYTRNG YHKHEELRIC VPHTSEEQGE DQSNKSSVTS TKSTEGATTN VSQEQAMWND 300 HSFPPQGGYF PHGTPWHLPW NPVQMSSPIP PPAFCPPGFS MPFYPATTYW GCTMPSAWNI 360 PRQAQPSSPN GANHDSTPNS PTLGKHSRED NMLKSSEGDG KKEISEEKSL WFPKTLRIDD 420 SEEAEKSSFW TTLGIKNNNA DSVPPRRLFQ AFPSKCDEKN HLVQVSSVLQ ANPAALSRSL 480 HFHETS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g010950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140025 | 0.0 | AC140025.7 Medicago truncatula clone mth2-11i16, complete sequence. | |||
GenBank | AC229705 | 0.0 | AC229705.9 Medicago truncatula clone mth2-49e17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621247.2 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A396GT85 | 0.0 | A0A396GT85_MEDTR; Putative transcription factor C2C2-Dof family | ||||
STRING | AES77465 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-98 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g010950.1 |
Entrez Gene | 11410541 |
Publications ? help Back to Top | |||
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