PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g010300.1 | ||||||||
Common Name | MTR_7g010300, MtrDRAFT_AC148762g29v2, MtrDRAFT_AC166313g11v2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 342aa MW: 38071.4 Da PI: 8.2253 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.8 | 1.4e-34 | 85 | 142 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +++YkeClkNhAa+lGgha+DGCgEfm+s++++ +++++lkCaACgCHRnFHRre+ee Medtr7g010300.1 85 TITYKECLKNHAANLGGHALDGCGEFMTSPTATpTDPTSLKCAACGCHRNFHRREPEE 142 789*****************************99********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.6E-28 | 86 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-18 | 86 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-30 | 87 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.733 | 88 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 211 | 281 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-19 | 212 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.8E-27 | 220 | 277 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDITLTPTPT PTPAPTSTTS IAPTILTAST TTLTKSPEQQ HETETPTTKF TTSTTPKISP 60 FSNGVLKRFH HHHHHFNHHN NHQPTITYKE CLKNHAANLG GHALDGCGEF MTSPTATPTD 120 PTSLKCAACG CHRNFHRREP EEPPLTTTHV IEYQPHHRHQ PLPPPPFSHR SPNSSSPPPI 180 SSSYYPSAPH MLLALSAALP ENVAAPNQTM LMNSHSNNSR KRFRTKFTQD QKDKMLKFAE 240 KVGWKMQKKD DEFVHEFCNE IGVDRSVLKV WMHNNKNTLA KRENINTNND INDGVKSFQL 300 PLEDEEHKNN VEIHGLNHNH YQNEGGVVGV TVRANGSSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 219 | 278 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g010300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148762 | 0.0 | AC148762.2 Medicago truncatula clone mth2-15p5, complete sequence. | |||
GenBank | AC166313 | 0.0 | AC166313.2 Medicago truncatula chromosome 7 clone mte1-4j13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621193.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 2e-67 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A2Q1B8 | 0.0 | A2Q1B8_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | AES77411 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-55 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g010300.1 |
Entrez Gene | 11422400 |
Publications ? help Back to Top | |||
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