PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g009730.1
Common NameMTR_7g009730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 585aa    MW: 64975.5 Da    PI: 6.8672
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g009730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30218277159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Medtr7g009730.1 218 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDMSILITTYEGTHNHP 277
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-31204277IPR003657WRKY domain
SuperFamilySSF1182909.42E-27212278IPR003657WRKY domain
PROSITE profilePS5081127.313213279IPR003657WRKY domain
SMARTSM007741.3E-36218278IPR003657WRKY domain
PfamPF031066.1E-27219277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSKMSSPSSS EIEEKRVTSI IHEVVEVDCS TEQEVTKEDK PKCSKEEMGE VKEENERLKT  60
MLSRVEKDYN SLQLRFFDIV NKDVSMKDIE DSSTNSHEEI DEEPEFVSLC LGRSPNEYKK  120
DAKNIENPNK PKEKEDMEVN LSLGLDSKYM VPMELVSDLS PMNSSEELPK EVEVEEKGAI  180
FSTNKSTKVI NVNDEISELL PAKRVRVSVR AKCDTPTMND GCQWRKYGQK IAKGNPCPRA  240
YYRCTVAPAC PVRKQVQRCA DDMSILITTY EGTHNHPLQV TASAMAYTTS AAASMMVSGS  300
STSSSSSHQN QNIHHNNSTS FGNSPTQING LNFNHHQFEQ SRTPKQHFFI PPNHNNLFPT  360
ITLDLTSPSS LSSSNIPSNV PRFSPNNLSF CSTQQPNFTP ISSIWNNSNN KLGFINNNTN  420
PNIEKTQVRP FNHFQENFYQ NQNCMTSYQT PSRQALAETI SKAISTDPSL HSVIAAAVSS  480
IVGQGSNNGG KQEENRENGL GAGLNLKLGE YPQMVSNNLL NQNGKGCLKG SYFKRLSPTT  540
SSQAKNFMLL QPSLPFSVSK SSASKPPSIV NNINNFDLDK NKHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-20209278876Probable WRKY transcription factor 4
2lex_A6e-20209278876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g009730.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1393550.0AC139355.8 Medicago truncatula clone mth2-36o3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621143.20.0probable WRKY transcription factor 72
TrEMBLG7KZU90.0G7KZU9_MEDTR; Putative transcription factor WRKY family
STRINGAES773610.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-53WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]