PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g007010.1
Common NameMTR_7g007010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 302aa    MW: 32936.4 Da    PI: 7.9898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g007010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-314107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
  Medtr7g007010.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  Medtr7g007010.1  98 AAVEAVLKGA 107
                      ****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.7E-1011297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0593109IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAANG  120
RGPPLKAYDI RHVSKEENSA ASTELTQQRV KPRSRKRSSL AKLKIQEEEK SSNDNKGVES  180
GSTEPTGSVE PVEEVMNRSV SHESSISHQS EAVAVVDGES KDSESETSMI LFRDEPELDR  240
KMKPADRTGE NGEEKVGLEL TLGLEPVSRV YHVVPVKKRR VVLKDCGVGS WNVELGLQYP  300
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.90790.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g007010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431550.0BT143155.1 Medicago truncatula clone JCVI-FLMt-7I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447443.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-112LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A072TVI90.0A0A072TVI9_MEDTR; Putative transcription factor AS2-LOB family
STRINGXP_004489144.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-97LOB domain-containing protein 41
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]