PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g486270.2
Common NameMTR_6g486270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 371aa    MW: 42750.6 Da    PI: 4.324
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g486270.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-14129216186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      +Wt++ + +L+e+  e+  +++r++l+   W +v++k+ +e ++er+  qC++ ++++++rykk+k ++ +     ss ++p+f++++
  Medtr6g486270.2 129 EWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHDVAEKVsEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMgLGLSSCKWPFFKKMD 216
                      5*************************************8889************************99998867999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-17128218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDGMEDDSRY PSKGYPLRRK NPNLRQKHPI RNLQYQRYND REEDFEDDEP EEFDDYNVDE  60
DGIGNGYVGN FEQNDGFVRK KRKMRSGPSG GFGGGSVSNY ELLPWGSGKF SNFNRGGSSS  120
SVHSSGSEEW TEHATFVLLE IWGEKFLQIG RNSLRSEEWH DVAEKVSEEL KVERNVAQCR  180
SVLDKVKRRY KKEKSRMDEM GLGLSSCKWP FFKKMDMLMS SSARQEYGLA CGVDSGEYVF  240
MNTRVYLNRS NGFDEMRDSP GESESSEDDE DEDFDGDEDD VDREEEEASY RILADSIQKF  300
GNIYEKIENT KRQQMMELEK VRLDFNRELE LQKKQILDRA QAEISKIQEA VDDADGDDED  360
TDTSADNLSE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RKKRKMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.176810.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g486270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2023410.0AC202341.28 Medicago truncatula clone mth2-24i7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453058.10.0trihelix transcription factor ASIL2
RefseqXP_024641899.10.0trihelix transcription factor ASIL2
RefseqXP_024641900.10.0trihelix transcription factor ASIL2
RefseqXP_024641901.10.0trihelix transcription factor ASIL2
TrEMBLA0A072UC930.0A0A072UC93_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGXP_004512963.11e-171(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-78Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]