PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g486270.1 | ||||||||
Common Name | MTR_6g486270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Trihelix | ||||||||
Protein Properties | Length: 371aa MW: 42750.6 Da PI: 4.324 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.5 | 2e-14 | 129 | 216 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++ + +L+e+ e+ +++r++l+ W +v++k+ +e ++er+ qC++ ++++++rykk+k ++ + ss ++p+f++++ Medtr6g486270.1 129 EWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHDVAEKVsEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMgLGLSSCKWPFFKKMD 216 5*************************************8889************************99998867999**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-17 | 128 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDGMEDDSRY PSKGYPLRRK NPNLRQKHPI RNLQYQRYND REEDFEDDEP EEFDDYNVDE 60 DGIGNGYVGN FEQNDGFVRK KRKMRSGPSG GFGGGSVSNY ELLPWGSGKF SNFNRGGSSS 120 SVHSSGSEEW TEHATFVLLE IWGEKFLQIG RNSLRSEEWH DVAEKVSEEL KVERNVAQCR 180 SVLDKVKRRY KKEKSRMDEM GLGLSSCKWP FFKKMDMLMS SSARQEYGLA CGVDSGEYVF 240 MNTRVYLNRS NGFDEMRDSP GESESSEDDE DEDFDGDEDD VDREEEEASY RILADSIQKF 300 GNIYEKIENT KRQQMMELEK VRLDFNRELE LQKKQILDRA QAEISKIQEA VDDADGDDED 360 TDTSADNLSE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 84 | RKKRKMR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17681 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g486270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202341 | 0.0 | AC202341.28 Medicago truncatula clone mth2-24i7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013453058.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_024641899.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_024641900.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_024641901.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A072UC93 | 0.0 | A0A072UC93_MEDTR; Myb/SANT-like DNA-binding domain protein | ||||
STRING | XP_004512963.1 | 1e-171 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2441 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 2e-78 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g486270.1 |
Entrez Gene | 25497372 |
Publications ? help Back to Top | |||
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