PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g465850.1 | ||||||||
Common Name | CBF11, MTR_6g465850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31210.1 Da PI: 5.847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.9 | 1.6e-15 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +Wv+eIr p +k+++++lg+f tae+Aa+a++ a+++l+g Medtr6g465850.1 61 PVYRGVRSRN-LDKWVCEIRQP---NKKTKIWLGTFPTAEMAARAHDVAALALKG 111 68****9666.9*********8...347***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-11 | 61 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 62 | 121 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.5E-26 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.784 | 62 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 62 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.77E-27 | 63 | 121 | No hit | No description |
PRINTS | PR00367 | 2.1E-7 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MFTTNNSIYS HPSSSSLSHI IDEFRGLSYH RMSVSNKEVR LAVTTPKKRG GRKKFKETRH 60 PVYRGVRSRN LDKWVCEIRQ PNKKTKIWLG TFPTAEMAAR AHDVAALALK GGDACLNFAD 120 SALTLPIPAT CETKDIQKTA AEAAEAFRPG KTVMTNDVAA LALRGRNACL NFADSASRLP 180 IPATKETRDI QNAAAEATEA FRPDKTLTTN DNETAVAAAA AEEQLMFSME EEEEEEEELN 240 IPESLRNMVL MSPTHSLGHE FEHIDHGDFQ DDEVSLWSFT I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g465850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC997208 | 0.0 | KC997208.1 Medicago truncatula genotype A17 C-repeat binding factor 11 (CBF11) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024641178.1 | 1e-105 | dehydration-responsive element-binding protein 1A | ||||
TrEMBL | S5MFQ5 | 0.0 | S5MFQ5_MEDTR; C-repeat binding factor 11 | ||||
STRING | GLYMA09G27180.2 | 1e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-46 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g465850.1 |
Entrez Gene | 25497254 |
Publications ? help Back to Top | |||
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