PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g465850.1
Common NameCBF11, MTR_6g465850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 282aa    MW: 31210.1 Da    PI: 5.847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g465850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1561111155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +    +Wv+eIr p   +k+++++lg+f tae+Aa+a++ a+++l+g
  Medtr6g465850.1  61 PVYRGVRSRN-LDKWVCEIRQP---NKKTKIWLGTFPTAEMAARAHDVAALALKG 111
                      68****9666.9*********8...347***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1161111IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2062121IPR016177DNA-binding domain
SMARTSM003806.5E-2662125IPR001471AP2/ERF domain
PROSITE profilePS5103220.78462119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3062121IPR001471AP2/ERF domain
PRINTSPR003672.1E-76374IPR001471AP2/ERF domain
CDDcd000184.77E-2763121No hitNo description
PRINTSPR003672.1E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MFTTNNSIYS HPSSSSLSHI IDEFRGLSYH RMSVSNKEVR LAVTTPKKRG GRKKFKETRH  60
PVYRGVRSRN LDKWVCEIRQ PNKKTKIWLG TFPTAEMAAR AHDVAALALK GGDACLNFAD  120
SALTLPIPAT CETKDIQKTA AEAAEAFRPG KTVMTNDVAA LALRGRNACL NFADSASRLP  180
IPATKETRDI QNAAAEATEA FRPDKTLTTN DNETAVAAAA AEEQLMFSME EEEEEEEELN  240
IPESLRNMVL MSPTHSLGHE FEHIDHGDFQ DDEVSLWSFT I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g465850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9972080.0KC997208.1 Medicago truncatula genotype A17 C-repeat binding factor 11 (CBF11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641178.11e-105dehydration-responsive element-binding protein 1A
TrEMBLS5MFQ50.0S5MFQ5_MEDTR; C-repeat binding factor 11
STRINGGLYMA09G27180.21e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-46C-repeat-binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]