PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g465150.1
Common NameMTR_6g465150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 439aa    MW: 47293.2 Da    PI: 7.7213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g465150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09112133426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C ++ + G C+yGdrCkF H+
  Medtr6g465150.1 112 RVCTYWIQ-GSCSYGDRCKFLHS 133
                      78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2252248IPR000571Zinc finger, CCCH-type
SMARTSM003560.0422347IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.41E-6111133IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7112131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826113135IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.17E-50130187IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.0E-18132248IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.7E-5139178IPR001680WD40 repeat
PfamPF004005.8E-4142178IPR001680WD40 repeat
PROSITE profilePS5029422.043146395IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.184146187IPR001680WD40 repeat
PRINTSPR003206.6E-7165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003203218255IPR001680WD40 repeat
SuperFamilySSF509782.17E-50225428IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.9E-34249427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.5E-4262299IPR001680WD40 repeat
PfamPF004000.0018266299IPR001680WD40 repeat
PROSITE profilePS5008213.182269308IPR001680WD40 repeat
PROSITE patternPS006780286300IPR019775WD40 repeat, conserved site
PRINTSPR003206.6E-7286300IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3E-4302339IPR001680WD40 repeat
PfamPF004000.0014304338IPR001680WD40 repeat
PRINTSPR003206.6E-7326340IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9343386IPR001680WD40 repeat
SMARTSM003204.6389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDFDGGNKRV YNRLGGSNGG DSKNQKVCFQ WQAGKCNRYP CPFLHSELPT SNGNGAPSKR  60
AYADNSSFSG NRRGGSSFNS WGPGRGGGRG RGGGRGGVGG GGGRGVVVNV ERVCTYWIQG  120
SCSYGDRCKF LHSWNVGDGF SLLTQLEGHK KVVSGIAMPS GSDKLYTGST DETVRVWDCQ  180
SGQCIAVINL GGEVGCMISE GPWLFVGIPN FVKAWNTQNS MEISLDGPVG QVYALVVIND  240
MLFAGTQDGA ILVWKFNVAA NCFEPAASLK GHTRGVVSLV VGANRLYSGS MDNTVRVWNL  300
ETLQCLQTLT EHTSVVMSVL CWDQFLISCS LDKTVKVWYA TESGNLEVTY THTEEHGIIT  360
LCGMHDAQGK PILLCSCNDN TVRLYDLPSF AERGKLFNKQ EVRAIQTGPG SIFFTGDGTG  420
QVRVWNWIPE PATSNNVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-231344265323Tako8
6g6n_A6e-231344265323Tako8
6g6n_B6e-231344265323Tako8
6g6n_C6e-231344265323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGRGGVGGG
294103RGGVGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g465150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096406e-42AP009640.1 Lotus japonicus genomic DNA, clone: LjB22H06, BM1971, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452551.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A072U9U50.0A0A072U9U5_MEDTR; Putative transcription factor C3H family
STRINGXP_004513686.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]