PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g088405.1
Common NameMTR_6g088405
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 220aa    MW: 24223.9 Da    PI: 5.6916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g088405.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-184392255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a++ l+g
  Medtr6g088405.1 43 LYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTYATAEMAARAHDVAALTLKG 92
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.11E-3342102No hitNo description
PfamPF008475.7E-134292IPR001471AP2/ERF domain
PROSITE profilePS5103223.16943100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3243101IPR001471AP2/ERF domain
SMARTSM003809.1E-3843106IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2143100IPR016177DNA-binding domain
PRINTSPR003672.3E-104455IPR001471AP2/ERF domain
PRINTSPR003672.3E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVDGNASLLQ SFASSSEEKK RGKKQDNGNK NNNKKSDNPN HPLYRGVRMR TWGKWVSEIR  60
EPRKKSRIWL GTYATAEMAA RAHDVAALTL KGSSAILNFP ELSASLPQPT SNSPRDIQAA  120
AAKAASMVAP PPSPMPTSSS SSTPYDLGEI VELPQLETYF ESPVPNNEFV FLDPVDYSQS  180
WYHSIYGDEE ENGYGSGCNL NMISMHDPEN TFLNVTYPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18411001272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g088405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453145.11e-163dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A072UDI41e-162A0A072UDI4_MEDTR; AP2 domain class transcription factor
STRINGXP_007152902.12e-67(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]