PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g080360.2
Common NameMTR_6g080360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 827aa    MW: 94205.5 Da    PI: 9.7841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g080360.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-12261303346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT eEd +l dav+ +G  +W ++a ++  +Rt+ qc +rw k
  Medtr6g080360.2 261 EWTGEEDAQLRDAVACFGQCDWQSVATYLE-RRTGTQCSNRWKK 303
                      7*****************************.***********87 PP
2Myb_DNA-binding45.51.7e-14310353146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eEde+l  av ++G + Wk Ia++++ gR   qc++r+++
  Medtr6g080360.2 310 KGAFTSEEDERLTVAVMLFGRK-WKQIAKYVP-GRIQSQCRDRYLN 353
                      799*****************99.*********.***********98 PP
3Myb_DNA-binding42.12.1e-13363404346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WTteEd +l  a++++G   W+++a+ +   Rt+ qc+ rw  
  Medtr6g080360.2 363 EWTTEEDSRLEAAITKHGCC-WSKVAEDVT-PRTDCQCRKRWMV 404
                      6*****************88.********9.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.013106202IPR001005SANT/Myb domain
PROSITE profilePS500905.657107198IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-10109125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-10173208IPR009057Homeodomain-like
SuperFamilySSF466894.97E-12183236IPR009057Homeodomain-like
PROSITE profilePS5129413.224201257IPR017930Myb domain
SMARTSM007170.0014205255IPR001005SANT/Myb domain
PfamPF139212.8E-12209270No hitNo description
Gene3DG3DSA:1.10.10.601.1E-10209257IPR009057Homeodomain-like
PROSITE profilePS5009010.185254305IPR017877Myb-like domain
SuperFamilySSF466894.31E-22256351IPR009057Homeodomain-like
SMARTSM007174.9E-8258307IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-14258306IPR009057Homeodomain-like
CDDcd001674.42E-9261303No hitNo description
PROSITE profilePS5129419.479305359IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-16308356IPR009057Homeodomain-like
SMARTSM007179.9E-13309357IPR001005SANT/Myb domain
CDDcd001671.47E-7312355No hitNo description
PfamPF139217.4E-14313372No hitNo description
SuperFamilySSF466896.17E-21335406IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-14357403IPR009057Homeodomain-like
PROSITE profilePS5129413.391360410IPR017930Myb domain
SMARTSM007171.3E-8360408IPR001005SANT/Myb domain
CDDcd001673.34E-8363405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MMRACLLNYR RKGQAFLHRP KLLLMRSRRI ELSRNFLEVS CIRKTGSAFS LRKDPRVQLI  60
SSKKPSASNK SKSHNKKASA MCYGPDENSL VANYKMVLER FPLSLPKKKW SDKERENLSK  120
GIKQQFQETL LQISVDRMSS ECLPGDANDM DNLIESVKGL EITPARIREF LPKVNWDRLA  180
SMYATGRTGA ECESRWLNCE DPLINHGPWT CEEDKSLLII VQEKGIRNWF DIAVSLATNR  240
LPFQCLARFQ RSLNPSIINS EWTGEEDAQL RDAVACFGQC DWQSVATYLE RRTGTQCSNR  300
WKKSICPVRK GAFTSEEDER LTVAVMLFGR KWKQIAKYVP GRIQSQCRDR YLNSLDPSLK  360
WSEWTTEEDS RLEAAITKHG CCWSKVAEDV TPRTDCQCRK RWMVLHPEQA HMLKEAKKKQ  420
RSQLSRNFVD RESERPTLAV NDLIPLQMVV PRSDVGAENL RKKRKRKSSH QKERSKKHAK  480
EAGLCIEEVQ DADPKKERPK RHAKKKVPFC PEEQDIVPKK ERPKRHSKKA RICPEEGQFI  540
AAYSDKMKTS ARGVPLFEQS NVHNNMRSKR HAKKAQIHLK EVENIAFNDK VKTCSKISES  600
QDGDDITLAC WRNKLKKKLS NCTKNASQTS SFSMPKIVSK QVGNQIPSNE QDGLSLTCGT  660
GGTEDLLIQT EVDSSEQVRK PESENAARKP EDAHNMNGDG NDKPLQVYVR RKTKKWSEDT  720
EGCRACSPSK LKKGSMLLHG NKPAIISDGS EPSMSKVVVE ETVLHGGVAE AEPTNINVVE  780
EETDLHGSVA DAEPTNINVE ENDDDLPLSF LQNKTRRRKR RHTIQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-271754027155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-271754027155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1460465RKKRKR
2460466RKKRKRK
3461466KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g080360.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452925.10.0uncharacterized protein LOC25496770
TrEMBLA0A072UB050.0A0A072UB05_MEDTR; Myb transcription factor
STRINGAES849180.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-142myb domain protein 4r1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]