PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g080360.1
Common NameMTR_103s0001, MTR_6g080360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 1047aa    MW: 117720 Da    PI: 7.0303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g080360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.8e-12481523346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT eEd +l dav+ +G  +W ++a ++  +Rt+ qc +rw k
  Medtr6g080360.1 481 EWTGEEDAQLRDAVACFGQCDWQSVATYLE-RRTGTQCSNRWKK 523
                      7*****************************.***********87 PP
2Myb_DNA-binding45.12.2e-14530573146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eEde+l  av ++G + Wk Ia++++ gR   qc++r+++
  Medtr6g080360.1 530 KGAFTSEEDERLTVAVMLFGRK-WKQIAKYVP-GRIQSQCRDRYLN 573
                      799*****************99.*********.***********98 PP
3Myb_DNA-binding41.72.7e-13583624346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WTteEd +l  a++++G   W+++a+ +   Rt+ qc+ rw  
  Medtr6g080360.1 583 EWTTEEDSRLEAAITKHGCC-WSKVAEDVT-PRTDCQCRKRWMV 624
                      6*****************88.********9.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.013326422IPR001005SANT/Myb domain
PROSITE profilePS500905.657327418IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-10329345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-10393428IPR009057Homeodomain-like
SuperFamilySSF466896.5E-12403456IPR009057Homeodomain-like
PROSITE profilePS5129413.224421477IPR017930Myb domain
SMARTSM007170.0014425475IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10429482IPR009057Homeodomain-like
PfamPF139213.8E-12429490No hitNo description
PROSITE profilePS5009010.185474525IPR017877Myb-like domain
SuperFamilySSF466896.11E-22476571IPR009057Homeodomain-like
SMARTSM007174.9E-8478527IPR001005SANT/Myb domain
CDDcd001672.27E-9481523No hitNo description
Gene3DG3DSA:1.10.10.604.1E-16483536IPR009057Homeodomain-like
PROSITE profilePS5129419.479525579IPR017930Myb domain
SMARTSM007179.9E-13529577IPR001005SANT/Myb domain
CDDcd001677.62E-8532575No hitNo description
PfamPF139219.9E-14533592No hitNo description
Gene3DG3DSA:1.10.10.604.5E-16537578IPR009057Homeodomain-like
SuperFamilySSF466891.36E-20555626IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-14579623IPR009057Homeodomain-like
SMARTSM007171.3E-8580628IPR001005SANT/Myb domain
PROSITE profilePS5129413.391580630IPR017930Myb domain
CDDcd001671.66E-8583625No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MSPRTDEFEQ DNTDLSATSS DDDDDGLKDD MAALARACTF TADEDEIEEV EEDPLLSTGD  60
AIVPFTANED SDPDDDLECL KRVQSLYKPT GNSVPSPSPV PMIAAAADDD EDDEDDFETV  120
RAIFKRFSAY DGGGKEAWAE GDQASSLMDE QDVVKSSISD NSDAGELCPD SQDPENNSKL  180
KFIKPCGADE TCKNDAGLSS QLPKKRSSFP PSAQAFIDAV KKNRALQKFL RSKLIEIEAK  240
IGENKKIRDN VKLLKDFQVS CIRKTGSAFS LRKDPRVQLI SSKKPSASNK SKSHNKKASA  300
MCYGPDENSL VANYKMVLER FPLSLPKKKW SDKERENLSK GIKQQFQETL LQISVDRMSS  360
ECLPGDANDM DNLIESVKGL EITPARIREF LPKVNWDRLA SMYATGRTGA ECESRWLNCE  420
DPLINHGPWT CEEDKSLLII VQEKGIRNWF DIAVSLATNR LPFQCLARFQ RSLNPSIINS  480
EWTGEEDAQL RDAVACFGQC DWQSVATYLE RRTGTQCSNR WKKSICPVRK GAFTSEEDER  540
LTVAVMLFGR KWKQIAKYVP GRIQSQCRDR YLNSLDPSLK WSEWTTEEDS RLEAAITKHG  600
CCWSKVAEDV TPRTDCQCRK RWMVLHPEQA HMLKEAKKKQ RSQLSRNFVD RESERPTLAV  660
NDLIPLQMVV PRSDVGAENL RKKRKRKSSH QKERSKKHAK EAGLCIEEVQ DADPKKERPK  720
RHAKKKVPFC PEEQDIVPKK ERPKRHSKKA RICPEEGQFI AAYSDKMKTS ARGVPLFEQS  780
NVHNNMRSKR HAKKAQIHLK EVENIAFNDK VKTCSKISES QDGDDITLAC WRNKLKKKLS  840
NCTKNASQTS SFSMPKIVSK QVGNQIPSNE QDGLSLTCGT GGTEDLLIQT EVDSSEQVRK  900
PESENAARKP EDAHNMNGDG NDKPLQVYVR RKTKKWSEDT EGCRACSPSK LKKGSMLLHG  960
NKPAIISDGS EPSMSKVVVE ETVLHGGVAE AEPTNINVVE EETDLHGSVA DAEPTNINVE  1020
ENDDDLPLSF LQNKTRRRKR RHTIQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-273986227155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-273986227155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680685RKKRKR
2680686RKKRKRK
3681686KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g080360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452925.10.0uncharacterized protein LOC25496770
TrEMBLG8A0D00.0G8A0D0_MEDTR; Myb transcription factor
STRINGAES849180.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-169myb domain protein 4r1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]