PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g073013.1
Common NameMTR_6g073013
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 180aa    MW: 19676.8 Da    PI: 8.0626
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g073013.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.52.1e-301571258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +++ Y+eCl+NhAaslG++a+DGCgEf+ ++++ + +++l+CaACgCHRnFHR+ ++
  Medtr6g073013.1 15 QNYIYRECLRNHAASLGSYATDGCGEFTIDDSSPSAVNSLQCAACGCHRNFHRKITA 71
                     5789*************************97777*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-251769IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.6751969IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-181968IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-251968IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.31E-1687159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2791160IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-29101159IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGGGMLSSS SSHSQNYIYR ECLRNHAASL GSYATDGCGE FTIDDSSPSA VNSLQCAACG  60
CHRNFHRKIT AITRESAAAA AMSDQMMEYS GGGGSGSDGR RKRYRTKFTP DQKEKMMGFA  120
EKLGWKLQRK ELDEEIERFC ESVGVSRQVF KVWMHNHKNS CFSNSSDPST GNANSSLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-221011601775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g073013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1602420.0AC160242.15 Medicago truncatula chromosome 6 clone mth2-65g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452758.11e-133zinc-finger homeodomain protein 5
SwissprotA2XLF42e-41ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-41ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A072UBE01e-132A0A072UBE0_MEDTR; Putative transcription factor ZF-HD family
STRINGXP_004513326.11e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-38homeobox protein 22
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]