PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g071140.2
Common NameMTR_6g071140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-X1
Protein Properties Length: 1174aa    MW: 127505 Da    PI: 8.0251
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g071140.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.62e-06492510119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG H C+++CH G+CppC+
  Medtr6g071140.2 492 CGVHACKETCHVGECPPCK 510
                      ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.42E-7193263No hitNo description
PROSITE profilePS500168.716200261IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590203258IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.362203259IPR001841Zinc finger, RING-type
CDDcd060087.91E-5292353No hitNo description
SMARTSM004380.05315333IPR000967Zinc finger, NF-X1-type
PfamPF014223.9317332IPR000967Zinc finger, NF-X1-type
CDDcd060086.89E-11360408No hitNo description
PfamPF014228.5E-4370387IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0024370389IPR000967Zinc finger, NF-X1-type
CDDcd060083.72E-6424469No hitNo description
PfamPF014220.041434451IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032434453IPR000967Zinc finger, NF-X1-type
CDDcd060084.76E-13482530No hitNo description
PfamPF014226.2E-5492510IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4E-5492511IPR000967Zinc finger, NF-X1-type
PfamPF014220.95549560IPR000967Zinc finger, NF-X1-type
SMARTSM00438130549580IPR000967Zinc finger, NF-X1-type
CDDcd060084.23E-7578630No hitNo description
PfamPF014229.8E-4588605IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001588607IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-5635683No hitNo description
PfamPF0142237645662IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11645663IPR000967Zinc finger, NF-X1-type
PfamPF014220.4698713IPR000967Zinc finger, NF-X1-type
SMARTSM0043818698728IPR000967Zinc finger, NF-X1-type
CDDcd060083.08E-5726775No hitNo description
SMARTSM004389.2737758IPR000967Zinc finger, NF-X1-type
PfamPF014241.7E-4867932IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.2E-59701025IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1174 aa     Download sequence    Send to blast
MSLQQRRERR EGSRFPSHRP PRQEWIPKGA GASSSASTTS TTTTASTTTA AAATTTVDQP  60
TSLHSHEKNT NSDGGSSNQG AVVAPTFARH RSNHHVAHRV EREHVAHRTD RDHVAHRVER  120
ERVAHRVERE HVAHRMEREH VAHRVEREHV AHRVEREHVA HRVERGRGRS GNMAGRQYGS  180
RDSSLPQLVQ EIQEKLTKGT VECMICYDMV RRSAPIWSCS SCYSIFHLNC IKKWARAPTS  240
VDLSAEKNLG FNWRCPGCQS VQHTSSKDIK YACFCGKRVD PPSDLYLTPH SCGEPCGKPL  300
EKEVFVTEER KDELCPHACV LQCHPGPCPP CKAFAPPRLC PCGKKRIATR CSDRQSDLTC  360
GQRCDKLLDC GRHHCENACH VGPCDPCQVL IEASCFCSKM TQVLFCGEMA MKGEFEAEGG  420
VFSCGSNCGN VLGCSNHICR EVCHPGSCGE CEFLPSRVKA CCCGKTKLED ERKSCVDPIP  480
TCSKVCSKTL RCGVHACKET CHVGECPPCK VLISQKCRCG STSRTVECYK TTENQKFTCQ  540
KPCGAKKNCG RHRCSEKCCP LSGPNNGLTT PDWDPHFCSM LCGKKLRCGQ HVCETLCHSG  600
HCPPCLETIF TDLACACGMT SIPPPLPCGT MPPLCQLPCS VPQPCGHSGS HSCHFGDCPP  660
CSVPVSKECV GGHVILRNIP CGSNNIKCNN PCGRTRQCGL HACGRSCHSP PCDILPGIVK  720
GLRAACGQTC GAPRSGCRHM CMALCHPGCP CPDARCEFPV TITCSCGRIS ANVPCDVGGN  780
NSNYNADAIF EASIIQKLPM PLQPVDANGQ KVPLGQRKLM CDEECAKLER KRVLADAFDI  840
TPSLDALHFG ENSSYELLSD TFRRDPKWVL AIEERCKILV LGKSKGTTHG LKVHVFCPMI  900
KDKRDAVRMI AERWKLAVNA AGWEPKRFIV ISATQKSKAP ARVLGVKGTT TLNAPLPTAF  960
DPLVDMDPRL VVSFPDLPRD ADISALVLRF GGECELVWLN DRNALAVFHD PARAATAMRR  1020
LDHGTVYQGA VSFVQNAGAS AASSVTSAWG GTKEGALRSN PWKKAAVLDP GWKEDSWGDE  1080
QWTTAGDSAN IQPSALKKEA PIPASLNPWN VLNHESSSSS SPATVIRSVA SGKQTESGNV  1140
STKVEPSAGG ADGGNSDATE AAEVVDDWEK AFE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g071140.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397060.0AC139706.8 Medicago truncatula clone mth2-28n21, complete sequence.
GenBankAC1414360.0AC141436.18 Medicago truncatula chromosome 6 clone mth2-31k19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619874.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_024641622.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLG7KQB20.0G7KQB2_MEDTR; NF-X1-type zinc finger protein NFXL1
STRINGAES760920.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]