PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g055910.1
Common NameMTR_6g055910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 284aa    MW: 32750.8 Da    PI: 7.061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g055910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ ++G  +W++++ + g+ R +k+c++rw +yl
  Medtr6g055910.1 16 KGLWSPEEDNKLSNYIMKHGHSCWSSVPIKAGLQRNGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding461.2e-1471114348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++ E++++  ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
  Medtr6g055910.1  71 MLSKHEEDKIMTLHQMLGNK-WSQIAQQLP-GRTDNEIKNYWHSYL 114
                      56899***************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-21865IPR009057Homeodomain-like
PROSITE profilePS5129414.1441163IPR017930Myb domain
SuperFamilySSF466892.24E-2714110IPR009057Homeodomain-like
SMARTSM007179.0E-111565IPR001005SANT/Myb domain
PfamPF002492.1E-131663IPR001005SANT/Myb domain
CDDcd001673.73E-91963No hitNo description
PROSITE profilePS5129423.37364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2366117IPR009057Homeodomain-like
SMARTSM007171.2E-1168116IPR001005SANT/Myb domain
PfamPF002493.7E-1371114IPR001005SANT/Myb domain
CDDcd001678.21E-973114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGFQLAEKVQ KSKYRKGLWS PEEDNKLSNY IMKHGHSCWS SVPIKAGLQR NGKSCRLRWI  60
NYLRPGLKRG MLSKHEEDKI MTLHQMLGNK WSQIAQQLPG RTDNEIKNYW HSYLKKKEVK  120
SKDIESHTQI QYASSSSDTM NSLLSTQKYA IQDPKYVLPE NINKSTATTH SDQSISKNYN  180
TANEVCHSSL PKLLFSEWLS LDQVNGCNSL NSDDSLVLKN GYDQNLIFQE NVIQMPEGQF  240
GEEFHDSLIQ NLENDVYYSQ IQMSNQVDEN ELVHYLNNDV MYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22161177107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g055910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619518.10.0transcription factor LAF1 isoform X1
SwissprotQ9M0K43e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLG7KMD30.0G7KMD3_MEDTR; Myb transcription factor
STRINGAES757360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-62myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]