PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g054080.1 | ||||||||
Common Name | MTR_6g054080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25430 Da PI: 9.2734 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 73.4 | 4.4e-23 | 4 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++dC++ p++ ++q +++ ++ +++G+ +l+ll+++ +++ +++++sl+yeA r+ +P yG++g+++++ + Medtr6g054080.1 4 SCNGCRVLRKGCNDDCIIKPCLewissSESQGRATLFLTRFYGRIGLLNLLTNATNQNqnPQAVFKSLLYEASGRLVNPTYGVLGLFWTGDWSR 97 6*********************9998777889*******************9995554236999****************************99 PP DUF260 88 eqlkaelallke 99 ++++e++l+++ Medtr6g054080.1 98 LEAAVEAVLTGS 109 999999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.641 | 3 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-18 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MKLSCNGCRV LRKGCNDDCI IKPCLEWISS SESQGRATLF LTRFYGRIGL LNLLTNATNQ 60 NQNPQAVFKS LLYEASGRLV NPTYGVLGLF WTGDWSRLEA AVEAVLTGSN INDNFTMIDG 120 QTSSGTVNAE NHVLPKTYDI RHVAKGTNVD IKGKTQFKRA GKILKPKPRV GSVDSATMLK 180 SLLNNTNMEI GESSSRVQTE KINEAAENQV NLELTLGFDC HSTKSKKILD K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g054080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452375.1 | 1e-172 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 4e-50 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A072UBI4 | 1e-170 | A0A072UBI4_MEDTR; LOB domain protein | ||||
STRING | AES84556 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-47 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g054080.1 |
Entrez Gene | 25496542 |
Publications ? help Back to Top | |||
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