PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g047750.1
Common NameMTR_6g047750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 663aa    MW: 73400.3 Da    PI: 6.7011
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g047750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.31.3e-892936622374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +++L+e+A+a+s+g++  a ++L+rl ++ + +  ++ qRla ++++AL++r++     + +   + e       e++ +++l+ e s ++k++
  Medtr6g047750.1 293 KQTLIEAANAISEGKNDVALEILNRLVQNLNLNSmNSDQRLANFMVRALKSRMNP----VENPPVVAEL---FGREHAESTQLLLENSVCFKVG 379
                      689************************99666665*******************9....3333333333...38999999************** PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vak. 184
                      +++aN aIlea+ +e  +   ++Df+i+qG Q+++Ll+aL +R+     +++ +++ +e+g  +++ ++ge L+  Ae+l++ fef+v+ v++ 
  Medtr6g047750.1 380 FMAANLAILEAAFEEngNSFCVVDFEIGQGKQYVNLLHALKARETARDGFKLKVIAVAENGGDDRVIAVGEMLRLQAEKLRIGFEFRVVsVSQr 473
                      **********8766558899************************99998888888888899***************************963335 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++ +l+ e L ++ +E+++Vn++++l r++desvs+e++rd++L+ vk+l P+vvv+veqe+++n+++Fl+r++e+  yysal ds+e++    
  Medtr6g047750.1 474 QVYELTRELLGCDVEETVIVNFAYKLNRIPDESVSTENPRDTLLRRVKTLAPRVVVIVEQEMNCNTAPFLARVAESWGYYSALCDSVEEN---- 563
                      9999***********************************************************************************999.... PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr....kvk.sdgyrveeesgslvlgWkdrpL 367
                       ++r+k+E+  ++r+++n+vaceg++r+er+e ++kWr+r+++aGFk  p+s+++a+ +k+ l+    +   + g +v+ee+g +++gW++r+L
  Medtr6g047750.1 564 -SDRVKIEEG-VSRKLCNLVACEGRDRVERCEVFGKWRARMSMAGFKMKPMSQNVAELIKSRLNignnESRvNSGLSVKEENGGICFGWMGRTL 655
                      .8********.9************************************************9996322233345789999*************** PP

             GRAS 368 vsvSaWr 374
                      +++SaWr
  Medtr6g047750.1 656 TVASAWR 662
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.698266637IPR005202Transcription factor GRAS
PfamPF035144.4E-87293662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MSSPGFNAGG GAGSSEFFSG RSQNTINNLI TTTNHHLLPS LYRTQQQPLP PIFLDPSSQI  60
QQNRFIGKRT LAEFQTQQQN HSFNNLNLVN NTNNNVNFNN SHVLSNLLLR SVKPRTTTTT  120
SSTNFQFHAN NNNTHNTPLS FSLPELQQYP YHQTQRLGVP LLHQSTINPN FHHYRNSNSK  180
LGQITNSIQT VQTIPVSGKV EENNNNNNDH TLLQELEKQL LEDNDEEGET ETASVITTSE  240
WSETYQNLIG PGLGPGPGQA QAQAQKLVSS SPTSSTTSST SSSAASPASV CSKQTLIEAA  300
NAISEGKNDV ALEILNRLVQ NLNLNSMNSD QRLANFMVRA LKSRMNPVEN PPVVAELFGR  360
EHAESTQLLL ENSVCFKVGF MAANLAILEA AFEENGNSFC VVDFEIGQGK QYVNLLHALK  420
ARETARDGFK LKVIAVAENG GDDRVIAVGE MLRLQAEKLR IGFEFRVVSV SQRQVYELTR  480
ELLGCDVEET VIVNFAYKLN RIPDESVSTE NPRDTLLRRV KTLAPRVVVI VEQEMNCNTA  540
PFLARVAESW GYYSALCDSV EENSDRVKIE EGVSRKLCNL VACEGRDRVE RCEVFGKWRA  600
RMSMAGFKMK PMSQNVAELI KSRLNIGNNE SRVNSGLSVK EENGGICFGW MGRTLTVASA  660
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-222946626375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.189920.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g047750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452181.10.0scarecrow-like protein 8
TrEMBLA0A072U8U50.0A0A072U8U5_MEDTR; GRAS family transcription factor
STRINGXP_004512836.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]