PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g046600.1 | ||||||||
Common Name | MTR_6g046600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 119aa MW: 13802.8 Da PI: 9.4045 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 55 | 1.6e-17 | 15 | 58 | 15 | 59 |
-TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 15 vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++ se+ rsYY+Ct+++ pvkkkvers d+++ ei+Y+geHnh Medtr6g046600.1 15 MERSEYLRSYYKCTYPNYPVKKKVERSL-DGEIAEIVYKGEHNHG 58 56799***********************.***************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 5.5E-12 | 14 | 57 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-14 | 14 | 60 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-9 | 14 | 59 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.889 | 15 | 60 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-12 | 15 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MLIDLRMMDI TRENMERSEY LRSYYKCTYP NYPVKKKVER SLDGEIAEIV YKGEHNHGKP 60 QHQKRNSGAT SGMTSDGMVQ DKVWSIPQFF NPSSSSVLLT LKHPCRESVQ RTRFLELM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7246 | 1e-107 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g046600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137553 | 0.0 | AC137553.45 Medicago truncatula chromosome 6 clone mth2-20p12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625561.1 | 3e-39 | WRKY transcription factor 44 | ||||
Refseq | XP_024625882.1 | 3e-39 | WRKY transcription factor 44 | ||||
Refseq | XP_024625883.1 | 3e-39 | WRKY transcription factor 44 | ||||
Refseq | XP_024625884.1 | 3e-39 | WRKY transcription factor 44 | ||||
Swissprot | Q6IEQ7 | 9e-21 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | G7KKK7 | 3e-84 | G7KKK7_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES75543 | 5e-85 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6790 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-19 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g046600.1 |
Entrez Gene | 11442827 |
Publications ? help Back to Top | |||
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