PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g037610.1
Common NameMTR_6g037610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 406aa    MW: 44160.2 Da    PI: 6.4101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g037610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20179228255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Medtr6g037610.1 179 RYRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFDTAEAAARAYDEAALRFRG 228
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23179237IPR016177DNA-binding domain
SMARTSM003801.1E-38179242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-33179237IPR001471AP2/ERF domain
PROSITE profilePS5103225.712179236IPR001471AP2/ERF domain
PfamPF008473.8E-14179228IPR001471AP2/ERF domain
PRINTSPR003671.5E-11180191IPR001471AP2/ERF domain
CDDcd000181.16E-15187238No hitNo description
PRINTSPR003671.5E-11202218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSLLTVAHQR GSGEFTGYTV KREGDDHEGG SDDGGSSNAS QLDFNQMFSG YNGDRELSEM  60
VSALTHVASS GSNQMSSNEW IQRSDFPLIS SFGNASSSSS YASSSWSGQK RGRDEESSGS  120
NQYITQAVVP PRLFRTVMVP SQESSSLSSV TEEARTSTTI ATSAASAASF EDSGEQRRRY  180
RGVRQRPWGK WAAEIRDPHK AQRVWLGTFD TAEAAARAYD EAALRFRGSR AKLNFPENVR  240
SIMPPPPQQQ PQLQSFPATA VPSGTPQRPV QGTSDMIRDY LEYSHILQSS GDFQLQQMQQ  300
QQQLQASNLV QQWYYNSQMA ALQSHSLLSS SSLSMNSNML PSTPSFSPST QLSSSSASFP  360
LFSSQQMGFF RPPENRPPGG SRGGGTELPP STWSDTSGHP PPPYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22178239163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.129250.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g037610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509784e-58AC150978.15 Medicago truncatula clone mth2-66m17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451886.10.0ethylene-responsive transcription factor ERF110
TrEMBLA0A072U8500.0A0A072U850_MEDTR; AP2 domain class transcription factor
STRINGGLYMA16G27950.19e-88(Glycine max)
STRINGXP_007151985.16e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-14related to AP2 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]