PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g035370.1
Common NameMTR_113s0022, MTR_6g035370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 647aa    MW: 72115.3 Da    PI: 5.7978
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g035370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.58.8e-2955138186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++qe+laL+++r++m+ ++++++ k+plW+evs+km++ g++r++k+Ckek+en+ k++k++keg+++++  + +t+++fdql+
  Medtr6g035370.1  55 RWPRQETLALLKIRSDMDGAFKDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYHKRTKEGRGGKS--DGKTYRFFDQLQ 138
                      8********************************************************************964..5557******98 PP
2trihelix100.99.9e-32464549187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev aLi++r+ ++ +++++  k+plWee+s  m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Medtr6g035370.1 464 RWPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISGLMKKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 549
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2452114IPR001005SANT/Myb domain
PROSITE profilePS500906.6954112IPR017877Myb-like domain
CDDcd122032.79E-2354119No hitNo description
PfamPF138374.3E-1854140No hitNo description
PROSITE profilePS500907.317457521IPR017877Myb-like domain
SMARTSM007177.4E-4461523IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4463520IPR009057Homeodomain-like
CDDcd122032.61E-27463528No hitNo description
PfamPF138375.7E-22463550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLGDSAVLGT GGGSSGDGAG AYHDGGGGSI SGDDERGGGS SRNEEGVDRS FGGNRWPRQE  60
TLALLKIRSD MDGAFKDASV KGPLWDEVSR KMADLGYQRN SKKCKEKFEN VYKYHKRTKE  120
GRGGKSDGKT YRFFDQLQAL ENNPSMHQSP SITPPPISTI PTPTTTPSFL SAPPTTTVPS  180
TTIPMSYTQS NPTHFPPIPS STNPINTNNP IPQITTTPPP SSFPNISTDF FSNSSSSSTS  240
SEETTTMEGG SNRRKRKRKW KDFFERLMKE VVEKQEELHK RFLEAIEKRE RERGAREEAW  300
RLQEMQRINR EREILAQERS LAATKDAAVM AFLQKIAEQQ EQQNLVPPVL NNSTIVPQQQ  360
QAPQETIPTP TPKPTPTPTP TPVPLPAAAA PLPIPIPAIP TPQQVQNPTV TVQQQTSVIP  420
QASPLPQHQQ QQQQVQVQQQ QVMNMEVAKS DNNGESMMHA SSSRWPKTEV EALIKLRTTL  480
DMKYQENGPK GPLWEEISGL MKKMGYNRNA KRCKEKWENI NKYFKKVKES NKKRPEDSKT  540
CPYFHQLDAL YRQKNKVEGA AAAASRPEGT MMAPLMVQPE QQWPPQQQVP PAAGADVTME  600
EAETENDRPH RDEEEYYDDD DGDDDEDEDE GIDNYEVVAN KPPPPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RRKRKR
2252258RRKRKRK
3253258RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.10580.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g035370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1420650.0BT142065.1 Medicago truncatula clone JCVI-FLMt-22B9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451833.10.0trihelix transcription factor GTL1
SwissprotQ391171e-81TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLG8A0T00.0G8A0T0_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES850680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-55Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]