PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g033350.1
Common NameMTR_6g033350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 776aa    MW: 84162.8 Da    PI: 4.792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g033350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-0880121346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e +++ ++ +G++ + +I+  +  ++t  +c+++++k
  Medtr6g033350.1  80 PWTSEEKEVFLEKFAAFGKD-FQKISTFLD-HKTTADCVEFYYK 121
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding26.31.7e-08294334446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      WT  E   +++a   +G++ +++Ia+++g +R+  qc+ ++ k
  Medtr6g033350.1 294 WTDVEKAAFLHALSSFGKD-FAKIAQCVG-TRSQFQCRAFFCK 334
                      *****************99.*********.********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1464124IPR009057Homeodomain-like
PROSITE profilePS5129315.96576127IPR017884SANT domain
SMARTSM007172.6E-777125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-479124IPR009057Homeodomain-like
PfamPF002491.8E-579121IPR001005SANT/Myb domain
PROSITE profilePS5129312.72289340IPR017884SANT domain
SMARTSM007178.3E-9290338IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-10292340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5293337IPR009057Homeodomain-like
PfamPF002491.5E-7293334IPR001005SANT/Myb domain
CDDcd001672.66E-6294334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MYSFVYFAAA NKLRLVPTSE MIKYTSQLLS ESKHDIHRST LKMPALILDQ KEKMNSMFLS  60
SNGLVEDPLA IEKERAMINP WTSEEKEVFL EKFAAFGKDF QKISTFLDHK TTADCVEFYY  120
KNHKSDCFEK IKKKDDDKVG KFFNAKTELI KWNSEANTSS LEVLRAASVT ADGIALNRKM  180
RSGRSLWRGY DNKTMSKGDK IIAEKPNSHA IIQEERETNA AADVLASICD DFHLPEAASS  240
SITSSADPVK GKRVRKSVKA RAICKQPPMP VMTQSIDPES CSDESCGEME LTDWTDVEKA  300
AFLHALSSFG KDFAKIAQCV GTRSQFQCRA FFCKTHKRIG MDLMGERAGV VGSPGDDDVD  360
GGRSDADNAC IPETASANGS DTSGSKTVVD QPAYDKNLYQ EESNPLVARN LSAESDESEE  420
INGKADRKEV NIFSNEYVTG SESKLGTDCN AAALYSFDGP GTVQHQSAIV ISDSTEIVKD  480
KPSEGGGAVT ELVSDMGTIE PCCSNSAAEG RLVSDGSSGL QGNELEASTV CRVDTDEVVT  540
DVVIELKDNV HNSRTSGNTS LSPVEASCSR LSADAENEPQ LCLEKPQFSG LSEGPVTKLN  600
MNMICSSSAT ELPLLPQKVE QQGPHKSLQC LPNSEDTPNV KIFGKVLTIP SSTQKPNSSA  660
KRNEENGTHD NTGTESAKLK VYDNDFRGID FNAPIMNSGH GSTVQPAFSP PLPDFNAPYM  720
GCSHGNTIQS GFSSLPASSI LLAKYPAAFG LNAQPFIDDD MRRANGSEEK EDPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C3e-1538129494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D3e-1538129494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.258220.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g033350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642022.10.0uncharacterized protein LOC25495914 isoform X1
RefseqXP_024642023.10.0uncharacterized protein LOC25495914 isoform X1
RefseqXP_024642024.10.0uncharacterized protein LOC25495914 isoform X2
TrEMBLA0A072U7C00.0A0A072U7C0_MEDTR; Myb DNA-binding domain protein
STRINGXP_004489929.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-64MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]