PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g033345.1 | ||||||||
Common Name | MTR_6g033345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 26279.4 Da PI: 6.6532 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 124 | 159 | 4 | 41 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 WT E +++a +G++ ++ Ia+++g +++ +qc+ Medtr6g033345.1 124 WTDVEKAAFLHALSSYGKD-FAMIAQYVG-TKSQYQCR 159 *****************99.*********.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.57E-10 | 118 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.023 | 119 | 170 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0032 | 120 | 168 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 122 | 164 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 123 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-6 | 124 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAVGIACNRK TCSGRALWRG YDNKAMSTGV SFITEKPNCF NIIRNENATV AAGVFTSICS 60 GCLLSEAASS SITSSAVHVR GKRVGKSVKA RSINKQPLMT VITRDIDQET CSNKSSGEVE 120 LTDWTDVEKA AFLHALSSYG KDFAMIAQYV GTKSQYQCRV LFSKTHKHNG MDLIGQRAEI 180 VGLPGDDDVD GGRSDADNAC IAETGSVNDS DTSGTKTGVD QLAYDKNAYH DESIPMETRN 240 LQLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g033345.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642022.1 | 3e-95 | uncharacterized protein LOC25495914 isoform X1 | ||||
Refseq | XP_024642023.1 | 3e-95 | uncharacterized protein LOC25495914 isoform X1 | ||||
Refseq | XP_024642024.1 | 3e-95 | uncharacterized protein LOC25495914 isoform X2 | ||||
TrEMBL | A0A396HE17 | 0.0 | A0A396HE17_MEDTR; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004489929.1 | 4e-78 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-14 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g033345.1 |
Entrez Gene | 25495915 |
Publications ? help Back to Top | |||
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