PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g033255.1
Common NameMTR_6g033255
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 212aa    MW: 23817.5 Da    PI: 9.9924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g033255.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-201968255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp++    +r++lg+f tae Aa a+++a+++++g
  Medtr6g033255.1 19 HYRGVRQRP-WGKWAAEIRDPKK---GARVWLGTFETAEAAATAYDEAALRFKG 68
                     8********.**********954...4************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-331877IPR001471AP2/ERF domain
CDDcd000185.44E-181876No hitNo description
SuperFamilySSF541719.81E-231977IPR016177DNA-binding domain
SMARTSM003806.6E-381982IPR001471AP2/ERF domain
PROSITE profilePS5103225.041976IPR001471AP2/ERF domain
PfamPF008472.0E-131968IPR001471AP2/ERF domain
PRINTSPR003671.4E-112031IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEKQEPSQPT NQGNEKKKHY RGVRQRPWGK WAAEIRDPKK GARVWLGTFE TAEAAATAYD  60
EAALRFKGNK AKLNFPRLIS NLPSDPKPPR NKNNASSSSS SSSQLAPPKP LFPSSLSSEE  120
VFPNLMQYAQ VLCSKDDEDL RRAASSLYNN NNHQQYHHQN NINNTNERFC YYNLPSFFST  180
PSTMSPSSTS KDVVVPRVGD CHPFDRNMRG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-261876160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-261676263ATERF1
3gcc_A2e-261676263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g033255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451611.11e-157ethylene-responsive transcription factor ERF113
TrEMBLA0A072U7981e-156A0A072U798_MEDTR; AP2 domain class transcription factor
STRINGXP_004515403.12e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-26related to AP2 6l
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]