PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g032990.2
Common NameMTR_6g032990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 398aa    MW: 45085.4 Da    PI: 6.8441
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g032990.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.7e-334296155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+
  Medtr6g032990.2 42 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 96
                     79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8793999IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-314098IPR009057Homeodomain-like
SuperFamilySSF466891.06E-164197IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-234296IPR006447Myb domain, plants
PfamPF002493.5E-104495IPR001005SANT/Myb domain
PfamPF143797.8E-26144190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYYHHHHQQQ QQARNMHALR MHMQGGGNGS SDSGLVLSTD AKPRLKWTPD LHERFIEAVN  60
QLGGADKATP KTVLKLMGIP GLTLYHLKSH LQKYRISRSM NGQTNTGSSK IAPTSEVVTS  120
RMSESSGIHM KDLNIGLQTN KNSDINEALN MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL  180
QSVLEKAKET LGRQNLGAMG LDAAKVQLSE LASRVSTENL DSKFSELKEM NVLWAQQTQE  240
GETIDYSMGS FLTNSEDSQR DQEIHNKSMN FRAYNGTLCE EVKENMMFLS SSNDKVLKGS  300
DEVPERTSSL LSMNIGVHEE ENFWRRNISK EDLEGEEWKR RKSIDTSGVQ LKLNSDKISQ  360
DYRLANFDMK LDLNSHDDNG ASSHSQKFDL NGFSWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-214298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-214298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-214298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-214298157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-214198158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.256570.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g032990.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1395850.0BT139585.1 Medicago truncatula clone JCVI-FLMt-20F6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451581.10.0myb-related protein 2 isoform X2
SwissprotQ9SQQ91e-118PHL9_ARATH; Myb-related protein 2
TrEMBLA0A072U7680.0A0A072U768_MEDTR; Myb-like transcription factor family protein
STRINGXP_004489714.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-118G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]