PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g032770.1

Common Name

MTR_6g032770

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 380aa MW: 43087.1 Da PI: 5.1575

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g032770.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+GfrFhP+d+e++++yL kkv ++++++ +i e+d++++ePwdLpkk+k +ekewyfF++rd+ky+tg+r+nrat+sgyWkatgkdke+++ Medtr6g032770.1 18 LPAGFRFHPNDDEIITFYLLKKVLNSNFSA-IAIGEADLNRCEPWDLPKKAKMREKEWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYK 110 799**********************999.88***********99999************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+gekt+Wvmhe+rl Medtr6g032770.1 111 GkSNQLVGMKKTLVFYKGRAPRGEKTNWVMHEFRL 145 756677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-60	14	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.316	18	170	IPR003441	NAC domain
Pfam	PF02365	5.2E-28	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEEQEPIVVN KSDEPLDLPA GFRFHPNDDE IITFYLLKKV LNSNFSAIAI GEADLNRCEP 60 WDLPKKAKMR EKEWYFFCQR DRKYPTGTRT NRATESGYWK ATGKDKEIYK GKSNQLVGMK 120 KTLVFYKGRA PRGEKTNWVM HEFRLDGQLS TCNLPSDAKD DWVVSKIFIK NNIEVKKTTS 180 FSNLLRMNSI GDDLLDFSSL PPLVDPPFSN NTIDDHDFKG INSSPSSSNG YCFPSYLMNN 240 EINLTNNYHA TNQGNFNGPL MQSSSSSSHQ LQPQIQIPNT PLNENMLSNY SYMNQGNNNN 300 GYIYGLENKE CKMEQFSTNN SMVSISQDTC LSNDINNETS SVVSKQEIGR NATLYEELEG 360 PSSIGPLSNL ESWEWLLKS*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEEQEPIVVN KSDEPLDLPA GFRFHPNDDE IITFYLLKKV LNSNFSAIAI GEADLNRCEP  60
WDLPKKAKMR EKEWYFFCQR DRKYPTGTRT NRATESGYWK ATGKDKEIYK GKSNQLVGMK  120
KTLVFYKGRA PRGEKTNWVM HEFRLDGQLS TCNLPSDAKD DWVVSKIFIK NNIEVKKTTS  180
FSNLLRMNSI GDDLLDFSSL PPLVDPPFSN NTIDDHDFKG INSSPSSSNG YCFPSYLMNN  240
EINLTNNYHA TNQGNFNGPL MQSSSSSSHQ LQPQIQIPNT PLNENMLSNY SYMNQGNNNN  300
GYIYGLENKE CKMEQFSTNN SMVSISQDTC LSNDINNETS SVVSKQEIGR NATLYEELEG  360
PSSIGPLSNL ESWEWLLKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	16	172	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	16	172	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	16	172	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	16	172	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-48	16	172	18	170	NAC domain-containing protein 19
3swm_B	2e-48	16	172	18	170	NAC domain-containing protein 19
3swm_C	2e-48	16	172	18	170	NAC domain-containing protein 19
3swm_D	2e-48	16	172	18	170	NAC domain-containing protein 19
3swp_A	2e-48	16	172	18	170	NAC domain-containing protein 19
3swp_B	2e-48	16	172	18	170	NAC domain-containing protein 19
3swp_C	2e-48	16	172	18	170	NAC domain-containing protein 19
3swp_D	2e-48	16	172	18	170	NAC domain-containing protein 19
4dul_A	1e-48	16	172	15	167	NAC domain-containing protein 19
4dul_B	1e-48	16	172	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g032770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003619003.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-105	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	G7KQ48	0.0	G7KQ48_MEDTR; NAC transcription factor-like protein
STRING	AES75221	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	8e-91	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Medtr6g032770.1
Entrez Gene	11416022

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]