PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g027700.1 | ||||||||
Common Name | MTR_6g027700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23186.2 Da PI: 8.8103 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.9 | 6.2e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+l+rkC++ C++apyf ++q +++fa+vhk+FGa nv+k l+++p++++++am++++yeA+ar++dP++G+v++i +l++q++ l+ae Medtr6g027700.1 7 PCGACKHLKRKCTNRCIFAPYFGKKQnEASFAAVHKVFGAGNVSKHLSTIPTNHHKKAMETITYEAQARISDPINGCVSTICALKKQVKALQAE 100 7*********************9988689***************************************************************** PP DUF260 94 lallkee 100 ++++k++ Medtr6g027700.1 101 VSMMKAQ 107 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.903 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MADISIPCGA CKHLKRKCTN RCIFAPYFGK KQNEASFAAV HKVFGAGNVS KHLSTIPTNH 60 HKKAMETITY EAQARISDPI NGCVSTICAL KKQVKALQAE VSMMKAQQQM NNGFAYVNAL 120 QTTDLQHQQM LQQPNFNVSV EPAYANNPSP SIEDLMNMNN FNPVLAATNN LMNMNNFNPG 180 FDTTKETASS SQSFQPFQNS RFSYHQGDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-28 | 7 | 101 | 11 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-28 | 7 | 101 | 11 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g027700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451537.1 | 1e-156 | LOB domain-containing protein 20 | ||||
TrEMBL | A0A072UIB6 | 1e-154 | A0A072UIB6_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | XP_004489657.1 | 3e-66 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-43 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g027700.1 |
Entrez Gene | 25495832 |
Publications ? help Back to Top | |||
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