PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr6g027460.1 | ||||||||
Common Name | MTR_6g027460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 369aa MW: 40599.1 Da PI: 8.2563 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.9 | 7.8e-37 | 92 | 151 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG++rnv vG+grrknk+ Medtr6g027460.1 92 PDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTNGGTMRNVAVGAGRRKNKHI 151 7899******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 80 | 149 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-30 | 94 | 150 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.028 | 96 | 150 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 98 | 134 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MNGEGDMFVK DSSFMLFGKK IPVSDSQIQA NSTTMISCSN SKHKGNDMPH TQIIEKSKNS 60 SNEENESKVN TSIVEDNVET SSTDQDKVLK KPDKIVQCPR CKSFDTKFCY FNNYNVNQPR 120 HFCRSCHRYW TNGGTMRNVA VGAGRRKNKH IASQYRHMIV ASDGIPTASL ETNDSSRYQH 180 GSNLESAAVF RCSNDNGIVL KFGRENASLD ESKGSMLNLM NNRRHVDASG NNCRENGEEE 240 TSLCVSSVTN GHTRGNELFE SEQNRSKPMQ SYPASSWIIP MNQRWNNVTS MVQSSMQMCN 300 PYGIDPTAMQ WCHAPMVAVT NIGLQFVPGS NRNGNVSIGS NGCISPSSST TSNSCISGNG 360 TPILGKHT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr6g027460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451513.1 | 0.0 | uncharacterized protein LOC25495812 | ||||
TrEMBL | A0A072U836 | 0.0 | A0A072U836_MEDTR; Dof zinc finger DOF5.2-like protein | ||||
STRING | XP_004489646.1 | 1e-125 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-38 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr6g027460.1 |
Entrez Gene | 25495812 |
Publications ? help Back to Top | |||
---|---|---|---|
|